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Philipp Bucher: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Claudio Lottaz, Christian Iseli, C. Victor Jongeneel, Philipp Bucher
    Modeling sequencing errors by combining Hidden Markov models. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:103-112 [Conf]
  2. Philipp Bucher, Amos Bairoch
    A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:53-61 [Conf]
  3. Philipp Bucher, Kay Hofmann
    A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:44-51 [Conf]
  4. Christian Iseli, C. Victor Jongeneel, Philipp Bucher
    ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:138-158 [Conf]
  5. Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurelien Grosdidier, Cédric Notredame
    APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:215-221 [Conf]
  6. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  7. Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher
    PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:265-274 [Journal]
  8. Florence Armand, Philipp Bucher, C. Victor Jongeneel, Edward E. Farmer
    Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:12, pp:2906-2908 [Journal]
  9. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  10. Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou
    Computational analysis of transcriptional regulatory elements: a field in flux. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:5, pp:361-362 [Journal]
  11. Thomas Junier, Marco Pagni, Philipp Bucher
    mmsearch: a motif arrangement language and search program. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:12, pp:1234-1235 [Journal]
  12. Philipp Bucher, Kevin Karplus, Nicolas Moeri, Kay Hofmann
    A Flexible Motif Search Technique Based on Generalized Profiles. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1996, v:20, n:1, pp:3-23 [Journal]
  13. Thomas Junier, Philipp Bucher
    SEView: a Java applet for browsing molecular sequence data. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 1998, v:1, n:, pp:3- [Journal]
  14. Emmanuelle Roulet, Igor Fisch, Thomas Junier, Philipp Bucher, Nicolas Mermod
    Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 1998, v:1, n:, pp:4- [Journal]
  15. Giovanna Ambrosini, Viviane Praz, Vidhya Jagannathan, Philipp Bucher
    Signal search analysis server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3618-3620 [Journal]
  16. Amos Bairoch, Philipp Bucher, Kay Hofmann
    The PROSITE database, its status in 1995. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1996, v:24, n:1, pp:189-196 [Journal]
  17. Amos Bairoch, Philipp Bucher, Kay Hofmann
    The PROSITE database, its status in 1997. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:217-221 [Journal]
  18. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  19. Philipp Bucher, B. Bryan
    Signal search analysis: a new method to localize and characterize functionally important DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:287-305 [Journal]
  20. Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch
    The PROSITE database, its status in 2002. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:235-238 [Journal]
  21. Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch
    Recent improvements to the PROSITE database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:134-137 [Journal]
  22. Kay Hofmann, Philipp Bucher, Laurent Falquet, Amos Bairoch
    The PROSITE database, its status in 1999. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:215-219 [Journal]
  23. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
    The InterPro Database, 2003 brings increased coverage and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:315-318 [Journal]
  24. Marco Pagni, Christian Iseli, Thomas Junier, Laurent Falquet, C. Victor Jongeneel, Philipp Bucher
    trEST, trGEN and Hits: access to databases of predicted protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:148-151 [Journal]
  25. Rouaïda Périer, Thomas Junier, Philipp Bucher
    The Eukaryotic Promoter Database EPD. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:353-357 [Journal]
  26. Rouaïda Périer, Thomas Junier, Claude Bonnard, Philipp Bucher
    The Eukaryotic Promoter Database (EPD): recent developments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:307-309 [Journal]
  27. Rouaïda Cavin Périer, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher
    The Eukaryotic Promoter Database (EPD). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:302-303 [Journal]
  28. Viviane Praz, Vidhya Jagannathan, Philipp Bucher
    CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:542-547 [Journal]
  29. Viviane Praz, Rouaïda Périer, Claude Bonnard, Philipp Bucher
    The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:322-324 [Journal]
  30. Christoph D. Schmid, Viviane Praz, Mauro Delorenzi, Rouaïda Périer, Philipp Bucher
    The Eukaryotic Promoter Database EPD: the impact of in silico primer extension. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:82-85 [Journal]
  31. Peter Sperisen, Christian Iseli, Marco Pagni, Brian J. Stevenson, Philipp Bucher, C. Victor Jongeneel
    trome, trEST and trGEN: databases of predicted protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:509-511 [Journal]
  32. Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, Philipp Bucher
    HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:90-94 [Journal]
  33. Christoph D. Schmid, Rouaïda Périer, Viviane Praz, Philipp Bucher
    EPD in its twentieth year: towards complete promoter coverage of selected model organisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:82-85 [Journal]

  34. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. [Citation Graph (, )][DBLP]


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