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Timothy L. Bailey: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Timothy L. Bailey, William Stafford Noble
    Searching for statistically significant regulatory modules. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:16-25 [Conf]
  2. Timothy L. Bailey, Charles Elkan
    Estimating the Accuracy of Learned Concepts. [Citation Graph (0, 0)][DBLP]
    IJCAI, 1993, pp:895-901 [Conf]
  3. Timothy L. Bailey, Charles Elkan
    Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:28-36 [Conf]
  4. Timothy L. Bailey, Charles Elkan
    The Value of Prior Knowledge in Discovering Motifs with MEME. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:21-29 [Conf]
  5. Timothy L. Bailey, Michael Gribskov
    The Megaprior Heuristic for Discovering Protein Sequence Patterns. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:15-24 [Conf]
  6. Timothy L. Bailey, William Noble Grundy
    Classifying proteins by family using the product of correlated p-values. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:10-14 [Conf]
  7. Timothy L. Bailey, Michael Gribskov
    Concerning the accuracy of MAST E-values. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:5, pp:488-489 [Journal]
  8. Timothy L. Bailey, Michael Gribskov
    Combining evidence using p-values: application to sequence homology searches. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:1, pp:48-54 [Journal]
  9. Mikael Bodén, Timothy L. Bailey
    Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:15, pp:1809-1814 [Journal]
  10. William Noble Grundy, Timothy L. Bailey
    Family pairwise search with embedded motif models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:6, pp:463-470 [Journal]
  11. William Noble Grundy, Timothy L. Bailey, Charles Elkan
    ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:4, pp:303-310 [Journal]
  12. William Noble Grundy, Timothy L. Bailey, Charles Elkan, Michael E. Baker
    Meta-MEME: motif-based hidden Markov models of protein families. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:4, pp:397-406 [Journal]
  13. Mikael Bodén, Zheng Yuan, Timothy L. Bailey
    Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:68- [Journal]
  14. Stefan M. Stanley, Timothy L. Bailey, John S. Mattick
    GONOME: measuring correlations between GO terms and genomic positions. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:94- [Journal]
  15. Timothy L. Bailey, Michael Gribskov
    Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:9, n:3, pp:575-596 [Journal]
  16. Timothy L. Bailey, Michael Gribskov
    Score Distributions for Simultaneous Matching to Multiple Motifs. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:1, pp:45-60 [Journal]
  17. Timothy L. Bailey, Michael Gribskov
    Methods and Statistics for Combining Motif Match Scores. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:2, pp:211-222 [Journal]
  18. Timothy L. Bailey, Charles Elkan
    Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization. [Citation Graph (0, 0)][DBLP]
    Machine Learning, 1995, v:21, n:1-2, pp:51-80 [Journal]
  19. Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li
    MEME: discovering and analyzing DNA and protein sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:369-373 [Journal]

  20. The Statistical Power of Phylogenetic Motif Models. [Citation Graph (, )][DBLP]


  21. STREAM: Static Thermodynamic REgulAtory Model of transcription. [Citation Graph (, )][DBLP]


  22. Optimizing static thermodynamic models of transcriptional regulation. [Citation Graph (, )][DBLP]


  23. Assessing phylogenetic motif models for predicting transcription factor binding sites. [Citation Graph (, )][DBLP]


  24. Assigning roles to DNA regulatory motifs using comparative genomics. [Citation Graph (, )][DBLP]


  25. Discriminative motif discovery in DNA and protein sequences using the DEME algorithm. [Citation Graph (, )][DBLP]


  26. Studying the functional conservation of cis-regulatory modules and their transcriptional output. [Citation Graph (, )][DBLP]


  27. Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data. [Citation Graph (, )][DBLP]


  28. The value of position-specific priors in motif discovery using MEME. [Citation Graph (, )][DBLP]


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