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Minoru Kanehisa: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jean-Marc Schwartz, Minoru Kanehisa
    A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:205- [Conf]
  2. Jean-Philippe Vert, Minoru Kanehisa
    Extracting active pathways from gene expression data. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:238-244 [Conf]
  3. Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa
    Development of an integrated Database for Genome Mapping and Nucleotide Sequences. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:68-76 [Conf]
  4. Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Ming-Yang Kao, Xiang-Yang Li, Weizhao Wang
    A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees. [Citation Graph (0, 0)][DBLP]
    ISAAC, 2006, pp:100-110 [Conf]
  5. Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa
    ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:25-34 [Conf]
  6. Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka
    Application of a new probabilistic model for recognizing complex patterns in glycans. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:6-14 [Conf]
  7. Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu
    Identification of metabolic units induced by environmental signals. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:375-383 [Conf]
  8. Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa
    Protein network inference from multiple genomic data: a supervised approach. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:363-370 [Conf]
  9. Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa
    Supervised enzyme network inference from the integration of genomic data and chemical information. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:468-477 [Conf]
  10. Yoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa
    Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:323-330 [Conf]
  11. Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka
    A new efficient probabilistic model for mining labeled ordered trees. [Citation Graph (0, 0)][DBLP]
    KDD, 2006, pp:177-186 [Conf]
  12. Jean-Philippe Vert, Minoru Kanehisa
    Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. [Citation Graph (0, 0)][DBLP]
    NIPS, 2002, pp:1425-1432 [Conf]
  13. Minoru Kanehisa
    Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:176- [Conf]
  14. Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa
    A score matrix to reveal the hidden links in glycans. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1457-1463 [Journal]
  15. Christian Burks, James W. Fickett, W. B. Goad, Minoru Kanehisa, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung, H. S. Bilofsky
    The GenBank nucleic acid sequence database. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1985, v:1, n:4, pp:225-233 [Journal]
  16. S. Goto, T. Nishioka, M. Kanehisa
    LIGAND: chemical database for enzyme reactions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:7, pp:591-599 [Journal]
  17. Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, A. Ogiwara, M. Kanehisa
    Multiple sequence alignment by parallel simulated annealing. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:3, pp:267-273 [Journal]
  18. Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa
    Fast and accurate database homology search using upper bounds of local alignment scores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:912-921 [Journal]
  19. Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa
    Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3976-3982 [Journal]
  20. Y. Matsuo, M. Kanehisa
    An approach to systematic detection of protein structural motifs. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:2, pp:153-159 [Journal]
  21. Keun-Joon Park, Minoru Kanehisa
    Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1656-1663 [Journal]
  22. Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
    The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:17, pp:3482-3489 [Journal]
  23. Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
    Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:20, pp:2488-2492 [Journal]
  24. Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu
    Clustering under the line graph transformation: application to reaction network. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:207- [Journal]
  25. Jean-Marc Schwartz, Minoru Kanehisa
    Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:186- [Journal]
  26. Takuji Yamada, Minoru Kanehisa, Susumu Goto
    Extraction of phylogenetic network modules from the metabolic network. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:130- [Journal]
  27. Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Toshiaki Katayama, Minoru Kanehisa, Satoru Miyano
    Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:6, pp:1295-1314 [Journal]
  28. Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa
    KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:267-272 [Journal]
  29. Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
    LIGAND database for enzymes, compounds and reactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:377-379 [Journal]
  30. Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa
    LIGAND: database of chemical compounds and reactions in biological pathways. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:402-404 [Journal]
  31. Susumu Goto, Takaaki Nishioka, Minoru Kanehisa
    LIGAND: chemical database of enzyme reactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:380-382 [Journal]
  32. Minoru Kanehisa
    Use of statistical criteria for screening potential homologies in nucleic acid sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:203-213 [Journal]
  33. Minoru Kanehisa, James W. Fickett, W. B. Goad
    A relational database system for the maintenance and verification of the Los Alamos sequence library. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:149-158 [Journal]
  34. Minoru Kanehisa, Susumu Goto
    KEGG: Kyoto Encyclopedia of Genes and Genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:27-30 [Journal]
  35. Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya
    The KEGG databases at GenomeNet. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:42-46 [Journal]
  36. Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori
    The KEGG resource for deciphering the genome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:277-280 [Journal]
  37. Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi
    Computer analysis and structure prediction of nucleic acids and proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:417-428 [Journal]
  38. Shuichi Kawashima, Minoru Kanehisa
    AAindex: Amino Acid index database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:374- [Journal]
  39. Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe
    Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:119-120 [Journal]
  40. Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe
    MAGEST: MAboya Gene Expression patterns and Sequence Tags. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:133-135 [Journal]
  41. Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa
    AAindex: Amino Acid Index Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:368-369 [Journal]
  42. Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa
    KEGG: Kyoto Encyclopedia of Genes and Genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:29-34 [Journal]
  43. Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa
    ODB: a database of operons accumulating known operons across multiple genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:358-362 [Journal]
  44. Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto
    EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:459-462 [Journal]
  45. Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa
    From genomics to chemical genomics: new developments in KEGG. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:354-357 [Journal]
  46. Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka
    Managing and Analyzing Carbohydrate Data. [Citation Graph (0, 0)][DBLP]
    SIGMOD Record, 2004, v:33, n:2, pp:33-38 [Journal]
  47. Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
    Inference of Protein-Protein Interactions by Using Co-evolutionary Information. [Citation Graph (0, 0)][DBLP]
    AB, 2007, pp:322-333 [Conf]

  48. KEGG for Medical and Pharmaceutical Applications. [Citation Graph (, )][DBLP]


  49. Mining significant tree patterns in carbohydrate sugar chains. [Citation Graph (, )][DBLP]


  50. Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. [Citation Graph (, )][DBLP]


  51. The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). [Citation Graph (, )][DBLP]


  52. varDB: a pathogen-specific sequence database of protein families involved in antigenic variation. [Citation Graph (, )][DBLP]


  53. E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs. [Citation Graph (, )][DBLP]


  54. Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework. [Citation Graph (, )][DBLP]


  55. Regulation of metabolic networks by small molecule metabolites. [Citation Graph (, )][DBLP]


  56. Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach. [Citation Graph (, )][DBLP]


  57. MIMOX: a web tool for phage display based epitope mapping. [Citation Graph (, )][DBLP]


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