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Lior Pachter: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Simon Cawley, Lior Pachter
    HMM sampling and applications to gene finding and alternative splicing. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:36-41 [Conf]
  2. Inna Dubchak, Lior Pachter, Liping Wei
    Genome-Wide Analysis and Comparative Genomics - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:112-114 [Conf]
  3. Serafim Batzoglou, Lior Pachter
    Gene Regulation - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:3-4 [Conf]
  4. Sourav Chatterji, Lior Pachter
    Multiple organism gene finding by collapsed gibbs sampling. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:187-193 [Conf]
  5. Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander
    Human and mouse gene structure: comparative analysis and application to exon prediction. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:46-53 [Conf]
  6. Lior Pachter, Marina Alexandersson, Simon Cawley
    Applications of generalized pair hidden Markov models to alignment and gene finding problems. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:241-248 [Conf]
  7. Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, William S. Beebee, Eric S. Lander, Bonnie Berger, Daniel J. Kleitman
    A dictionary based approach for gene annotation. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:285-294 [Conf]
  8. Lior Pachter, Fumei Lam
    Picking alignments from (steiner) trees. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:246-253 [Conf]
  9. Sagi Snir, Lior Pachter
    Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:265-280 [Conf]
  10. Lior Pachter, David E Speyer
    Reconstructing trees from subtree weights. [Citation Graph (0, 0)][DBLP]
    Appl. Math. Lett., 2004, v:17, n:6, pp:615-621 [Journal]
  11. Inna Dubchak, Lior Pachter
    The computational challenges of applying comparative-based computational methods to whole genomes. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:1, pp:18-22 [Journal]
  12. Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak
    VISTA : visualizing global DNA sequence alignments of arbitrary length. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:1046-1047 [Journal]
  13. Jon D. McAuliffe, Lior Pachter, Michael I. Jordan
    Multiple-sequence functional annotation and the generalized hidden Markov phylogeny. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:12, pp:1850-1860 [Journal]
  14. Ariel S. Schwartz, Lior Pachter
    Multiple alignment by sequence annealing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:24-29 [Journal]
  15. Lior Pachter
    Combinatorial Approaches and Conjectures for 2-Divisibility Problems Concerning Domino Tilings of Polyominoes. [Citation Graph (0, 0)][DBLP]
    Electr. J. Comb., 1997, v:4, n:1, pp:- [Journal]
  16. Lior Pachter
    Constructing Status Injective Graphs. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1997, v:80, n:1, pp:107-113 [Journal]
  17. Daniel J. Kleitman, Lior Pachter
    Finding Convex Sets Among Points in the Plane. [Citation Graph (0, 0)][DBLP]
    Discrete & Computational Geometry, 1998, v:19, n:3, pp:405-410 [Journal]
  18. Sourav Chatterji, Lior Pachter
    Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:599-608 [Journal]
  19. Fumei Lam, Marina Alexandersson, Lior Pachter
    Picking Alignments from (Steiner) Trees. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:509-520 [Journal]
  20. Lior Pachter, Marina Alexandersson, Simon Cawley
    Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:389-399 [Journal]
  21. Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, E. Banks, Eric S. Lander, Daniel J. Kleitman, Bonnie Berger
    A Dictionary-Based Approach for Gene Annotation. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:- [Journal]
  22. Nicolas Bray, Lior Pachter
    MAVID multiple alignment server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3525-3526 [Journal]
  23. Simon Cawley, Lior Pachter, Marina Alexandersson
    SLAM web server for comparative gene finding and alignment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3507-3509 [Journal]
  24. Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, Inna Dubchak
    VISTA: computational tools for comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:273-279 [Journal]
  25. Fumei Lam, Lior Pachter
    Forcing numbers of stop signs. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:2, n:303, pp:409-416 [Journal]
  26. Radu Mihaescu, Dan Levy, Lior Pachter
    Why neighbor-joining works [Citation Graph (0, 0)][DBLP]
    CoRR, 2006, v:0, n:, pp:- [Journal]
  27. Lior Pachter, Peter Kim
    Forcing matchings on square grids. [Citation Graph (0, 0)][DBLP]
    Discrete Mathematics, 1998, v:190, n:1-3, pp:287-294 [Journal]

  28. Geometry of rank tests. [Citation Graph (, )][DBLP]


  29. Why Neighbor-Joining Works. [Citation Graph (, )][DBLP]


  30. Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. [Citation Graph (, )][DBLP]


  31. Specific alignment of structured RNA: stochastic grammars and sequence annealing. [Citation Graph (, )][DBLP]


  32. TopHat: discovering splice junctions with RNA-Seq. [Citation Graph (, )][DBLP]


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