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Publications of Author

1. Itay Mayrose, Nir Friedman, Tal Pupko
   A Gamma mixture model better accounts for among site rate heterogeneity. [Citation Graph (0, 0)][DBLP]
   ECCB/JBI, 2005, pp:158- [Conf]
   
2. Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko
   In silico identification of functional regions in proteins. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2005, pp:328-337 [Conf]
   
3. Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal
   Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. [Citation Graph (0, 0)][DBLP]
   ISMB, 2002, pp:71-77 [Conf]
   
4. Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko
   A structural EM algorithm for phylogenetic inference. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2001, pp:132-140 [Conf]
   
5. Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur
   A Chemical-Distance-Based Test for Positive Darwinian Selection. [Citation Graph (0, 0)][DBLP]
   WABI, 2001, pp:142-155 [Conf]
   
6. Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal
   ConSeq: the identification of functionally and structurally important residues in protein sequences. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2004, v:20, n:8, pp:1322-1324 [Journal]
   
7. Adi Doron-Faigenboim, Adi Stern, Itay Mayrose, Eran Bacharach, Tal Pupko
   Selecton: a server for detecting evolutionary forces at a single amino-acid site. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:9, pp:2101-2103 [Journal]
   
8. Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E. Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben-Tal
   ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:1, pp:163-164 [Journal]
   
9. Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, Nir Friedman
   A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2002, v:18, n:8, pp:1116-1123 [Journal]
   
10. Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman
    Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:136-141 [Journal]
    
11. Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko
    A Structural EM Algorithm for Phylogenetic Inference. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:331-353 [Journal]
    
12. Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal
    ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:299-302 [Journal]
    
13. Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan
    Incomplete Directed Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2004, v:33, n:3, pp:590-607 [Journal]
    
14. 
    Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. [Citation Graph (, )][DBLP]
    
    
15. 
    Pepitope: epitope mapping from affinity-selected peptides. [Citation Graph (, )][DBLP]
    
    
16. 
    Epitopia: a web-server for predicting B-cell epitopes. [Citation Graph (, )][DBLP]