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Ralf Zimmer :
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Florian Sohler , Ralf Zimmer Identifying active transcription factors and kinases from expression data using pathway queries. [Citation Graph (0, 0)][DBLP ] ECCB/JBI, 2005, pp:122- [Conf ] Martin Szugat , Daniel Güttler , Katrin Fundel , Florian Sohler , Ralf Zimmer Web servicing the biological office. [Citation Graph (0, 0)][DBLP ] ECCB/JBI, 2005, pp:269- [Conf ] Robert Küffner , Katrin Fundel , Ralf Zimmer Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. [Citation Graph (0, 0)][DBLP ] ECCB/JBI, 2005, pp:267- [Conf ] Mario Albrecht , Daniel Hanisch , Ralf Zimmer , Thomas Lengauer Improving Fold Recognition of Protein Threading by Experimental Distance Constraints. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2001, pp:68-77 [Conf ] Jan Freudenberg , Ralf Zimmer , Daniel Hanisch , Thomas Lengauer A new Method for Unification of Existing Protein Structure- and Sequence-Families. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2001, pp:78-84 [Conf ] Katrin Fundel , Robert Küffner , Thomas Aigner , Ralf Zimmer Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2005, pp:77-91 [Conf ] Jan E. Gewehr , Niklas von Öhsen , Ralf Zimmer Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold Recognition. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2004, pp:141-148 [Conf ] Daniel Hanisch , Ralf Zimmer , Thomas Lengauer ProML - the Protein Markup Language for specification of protein sequences, structures and families. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2001, pp:58-67 [Conf ] Robert Küffner , Ralf Zimmer , Thomas Lengauer Pathway analysis in metabolic databases via differetial metabolic display (DMD). [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 1999, pp:141-147 [Conf ] Marko Wöhler , Ralf Thiele , Ralf Zimmer New scoring Schemes for Protein fold recognition based on Voronoi contacts. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 1997, pp:111-120 [Conf ] Ralf Zimmer , Ralf Thiele Fast Protein Fold Recognition and Accurate Sequence-Structure Alignment. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics - Selected Papers, 1996, pp:137-146 [Conf ] Ralf Zimmer , Ralf Thiele Fast Protein Fold Recognition and Accurate Sequence to Structure Alignment. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 1996, pp:78-83 [Conf ] Florian Sohler , Daniel Hanisch , Ralf Zimmer New methods for joint analysis of biological networks and expression data. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2003, pp:141-146 [Conf ] Ingolf Sommer , Niklas von Öhsen , Alexander Zien , Ralf Zimmer , Thomas Lengauer Confidence Measures for Fold Recognition. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 2001, pp:26-33 [Conf ] Michael Amberg , Jens Wehrmann , Ralf Zimmer Factors Influencing the Design of Mobile Services. [Citation Graph (0, 0)][DBLP ] MOBIS, 2004, pp:199-212 [Conf ] Daniel Hanisch , Alexander Zien , Ralf Zimmer , Thomas Lengauer Co-clustering of biological networks and gene expression data. [Citation Graph (0, 0)][DBLP ] ISMB, 2002, pp:145-154 [Conf ] Ralf Thiele , Ralf Zimmer , Thomas Lengauer Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. [Citation Graph (0, 0)][DBLP ] ISMB, 1995, pp:384-392 [Conf ] Alexander Zien , Thomas Aigner , Ralf Zimmer , Thomas Lengauer Centralization: a new method for the normalization of gene expression data. [Citation Graph (0, 0)][DBLP ] ISMB (Supplement of Bioinformatics), 2001, pp:323-331 [Conf ] Alexander Zien , Robert Küffner , Ralf Zimmer , Thomas Lengauer Analysis of Gene Expression Data with Pathway Scores. [Citation Graph (0, 0)][DBLP ] ISMB, 2000, pp:407-417 [Conf ] Daniel Hanisch , Juliane Fluck , Heinz-Theodor Mevissen , Ralf Zimmer Playing Biology's Name Game: Identifying Protein Names in Scientific Text. [Citation Graph (0, 0)][DBLP ] Pacific Symposium on Biocomputing, 2003, pp:403-414 [Conf ] Niklas von Öhsen , Ingolf Sommer , Ralf Zimmer Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction. [Citation Graph (0, 0)][DBLP ] Pacific Symposium on Biocomputing, 2003, pp:252-263 [Conf ] Christian Lemmen , Alexander Zien , Ralf Zimmer , Thomas Lengauer Application of Parameter Optimization to Molecular Comparison Problems. [Citation Graph (0, 0)][DBLP ] Pacific Symposium on Biocomputing, 1999, pp:482-493 [Conf ] Alexander Zien , Ralf Zimmer , Thomas Lengauer A simple iterative approach to parameter optimization. [Citation Graph (0, 0)][DBLP ] RECOMB, 2000, pp:318-327 [Conf ] Alexander Zien , Juliane Fluck , Ralf Zimmer , Thomas Lengauer Microarrays: how many do you need? [Citation Graph (0, 0)][DBLP ] RECOMB, 2002, pp:321-330 [Conf ] Ralf Zimmer , Thomas Lengauer Fast and numerically stable parametric alignment of biosequences. [Citation Graph (0, 0)][DBLP ] RECOMB, 1997, pp:344-353 [Conf ] Niklas von Öhsen , Ralf Zimmer Improving Profile-Profile Alignments via Log Average Scoring. [Citation Graph (0, 0)][DBLP ] WABI, 2001, pp:11-26 [Conf ] Thomas Lengauer , Ralf Zimmer Protein Structure Prediction Methods for Drug Design. [Citation Graph (0, 0)][DBLP ] Briefings in Bioinformatics, 2000, v:1, n:3, pp:275-288 [Journal ] Fabian Birzele , Jan E. Gewehr , Ralf Zimmer QUASAR - scoring and ranking of sequence-structure alignments. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:24, pp:4425-4426 [Journal ] Torsten Crass , Iris Antes , Rico Basekow , Peer Bork , Christian Buning , Maik Christensen , Holger Claussen , Christian Ebeling , Peter Ernst , Valérie Gailus-Durner , Karl-Heinz Glatting , Rolf Gohla , Frank Gößling , Korbinian Grote , Karsten R. Heidtke , Alexander Herrmann , Sean O'Keeffe , O. Kießlich , Sven Kolibal , Jan O. Korbel , Thomas Lengauer , Ines Liebich , Mark van der Linden , Hannes Luz , Kathrin Meissner , Christian von Mering , Heinz-Theodor Mevissen , Hans-Werner Mewes , Holger Michael , Martin Mokrejs , Tobias Müller , Heike Pospisil , Matthias Rarey , Jens G. Reich , Ralf Schneider , Dietmar Schomburg , Steffen Schulze-Kremer , Knut Schwarzer , Ingolf Sommer , Stephan Springstubbe , Sándor Suhai , Gnanasekaran Thoppae , Martin Vingron , Jens Warfsmann , Thomas Werner , Daniel Wetzler , Edgar Wingender , Ralf Zimmer The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:2, pp:268-270 [Journal ] Jan E. Gewehr , Ralf Zimmer SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2006, v:22, n:2, pp:181-187 [Journal ] Robert Küffner , Ralf Zimmer , Thomas Lengauer Pathway analysis in metabolic databases via differential metabolic display (DMD). [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2000, v:16, n:9, pp:825-836 [Journal ] Niklas von Öhsen , Ingolf Sommer , Ralf Zimmer , Thomas Lengauer Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:14, pp:2228-2235 [Journal ] Ingolf Sommer , Alexander Zien , Niklas von Öhsen , Ralf Zimmer , Thomas Lengauer Confidence measures for protein fold recognition. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2002, v:18, n:6, pp:802-812 [Journal ] Florian Sohler , Daniel Hanisch , Ralf Zimmer New methods for joint analysis of biological networks and expression data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:10, pp:1517-1521 [Journal ] Ralf Zimmer , Marko Wöhler , Ralf Thiele New scoring schemes for protein fold recognition based on Voronoi contacts. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 1998, v:14, n:3, pp:295-308 [Journal ] Chad A. Davis , Fabian Gerick , Volker Hintermair , Caroline C. Friedel , Katrin Fundel , Robert Küffner , Ralf Zimmer Reliable gene signatures for microarray classification: assessment of stability and performance. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2006, v:22, n:19, pp:2356-2363 [Journal ] Fabian Birzele , Jan E. Gewehr , Gergely Csaba , Ralf Zimmer Vorolign - fast structural alignment using Voronoi contacts. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2007, v:23, n:2, pp:205-211 [Journal ] Jan E. Gewehr , Martin Szugat , Ralf Zimmer BioWeka - extending the Weka framework for bioinformatics. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2007, v:23, n:5, pp:651-653 [Journal ] Katrin Fundel , Robert Küffner , Ralf Zimmer RelEx - Relation extraction using dependency parse trees. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2007, v:23, n:3, pp:365-371 [Journal ] Mario Albrecht , Daniel Hanisch , Ralf Zimmer , Thomas Lengauer Improving fold recognition of protein threading by experimental distance constraints. [Citation Graph (0, 0)][DBLP ] In Silico Biology, 2002, v:2, n:, pp:30- [Journal ] Jan Freudenberg , Ralf Zimmer , Daniel Hanisch , Thomas Lengauer A hypergraph-based method for unification of existing protein structure- and sequence-families. [Citation Graph (0, 0)][DBLP ] In Silico Biology, 2002, v:2, n:, pp:31- [Journal ] Daniel Hanisch , Ralf Zimmer , Thomas Lengauer ProML - the Protein Markup Language for specification of protein sequences, structures and families. [Citation Graph (0, 0)][DBLP ] In Silico Biology, 2002, v:2, n:, pp:29- [Journal ] Alexander Zien , Juliane Fluck , Ralf Zimmer , Thomas Lengauer Microarrays: How Many Do You Need? [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 2003, v:10, n:3/4, pp:653-667 [Journal ] Alexander Zien , Ralf Zimmer , Thomas Lengauer A Simple Iterative Approach to Parameter Optimization. [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 2000, v:7, n:3-4, pp:483-501 [Journal ] Jan E. Gewehr , Volker Hintermair , Ralf Zimmer AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2007, v:23, n:10, pp:1203-1210 [Journal ] Protein structure alignment considering phenotypic plasticity. [Citation Graph (, )][DBLP ] Intuitive Modeling of Dynamic Systems with Petri Nets and Fuzzy Logic. [Citation Graph (, )][DBLP ] Identifying the Topology of Protein Complexes from Affinity Purification Assays. [Citation Graph (, )][DBLP ] Characterization of Protein Interactions. [Citation Graph (, )][DBLP ] Veranstaltung zum Tagungsmotto: Bioinformatik und Biotechnologie. [Citation Graph (, )][DBLP ] Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast. [Citation Graph (, )][DBLP ] Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data. [Citation Graph (, )][DBLP ] Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes. [Citation Graph (, )][DBLP ] ProCope - protein complex prediction and evaluation. [Citation Graph (, )][DBLP ] Identifying the topology of protein complexes from affinity purification assays. [Citation Graph (, )][DBLP ] HALO - a Java framework for precise transcript half-life determination. [Citation Graph (, )][DBLP ] Influence of degree correlations on network structure and stability in protein-protein interaction networks. [Citation Graph (, )][DBLP ] FERN - a Java framework for stochastic simulation and evaluation of reaction networks. [Citation Graph (, )][DBLP ] ProMiner: rule-based protein and gene entity recognition. [Citation Graph (, )][DBLP ] A simple approach for protein name identification: prospects and limits. [Citation Graph (, )][DBLP ] Gene and protein nomenclature in public databases. [Citation Graph (, )][DBLP ] Inferring topology from clustering coefficients in protein-protein interaction networks. [Citation Graph (, )][DBLP ] miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature. [Citation Graph (, )][DBLP ] Search in 0.003secs, Finished in 0.457secs