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Publications of Author

1. Mario Stanke, Stephan Waack
   Gene prediction with a hidden Markov model and a new intron submodel. [Citation Graph (0, 0)][DBLP]
   ECCB, 2003, pp:215-225 [Conf]
   
2. Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack
   Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2006, v:7, n:, pp:62- [Journal]
   
3. Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern
   AUGUSTUS: a web server for gene finding in eukaryotes. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:309-312 [Journal]
   
4. Mario Stanke, Burkhard Morgenstern
   AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:465-467 [Journal]
   
5. Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke
   jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:463-465 [Journal]
   
6. Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern
   AUGUSTUS: ab initio prediction of alternative transcripts. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:435-439 [Journal]
   
7. Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, A. Pohl, J. S. Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, R. Baertsch, David Haussler, W. James Kent
   The UCSC genome browser database: update 2007. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:668-673 [Journal]
   
8. 
   Using native and syntenically mapped cDNA alignments to improve de novo gene finding. [Citation Graph (, )][DBLP]
   
   
9. 
   HIV classification using the coalescent theory. [Citation Graph (, )][DBLP]
   
   
10. 
    Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. [Citation Graph (, )][DBLP]
    
    
11. 
    A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. [Citation Graph (, )][DBLP]