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Janet M. Thornton: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Janet M. Thornton
    The proteome and the metabolome. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:237- [Conf]
  2. Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski
    [Invited Lecture] Protein Folds and Functions. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  3. Jonathan A. Barker, Janet M. Thornton
    Software Engineering Challenges in Bioinformatics. [Citation Graph (0, 0)][DBLP]
    ICSE, 2004, pp:12-15 [Conf]
  4. Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells
    SCOPEC: a database of protein catalytic domains. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:130-136 [Conf]
  5. Janet M. Thornton, David Gilbert, Catherine Brooksbank
    ISMB/ECCB 2004. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:1-2 [Conf]
  6. Janet M. Thornton, David Gilbert, Catherine Brooksbank
    ISMB/ECCB 2004 Organization. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:3-5 [Conf]
  7. Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo
    Microeconomic Principles Explain an Optimal Genome Size in Bacteria. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:43- [Conf]
  8. David Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon
    Une technique déclarative pour filtrer des motifs topologiques de protéines. [Citation Graph (0, 0)][DBLP]
    JFPLC, 2000, pp:165-0 [Conf]
  9. Jonathan A. Barker, Janet M. Thornton
    An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1644-1649 [Journal]
  10. James E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo
    A practical and robust sequence search strategy for structural genomics target selection. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:14, pp:2288-2295 [Journal]
  11. Carles Ferrer-Costa, H. P. Shanahan, Susan Jones, Janet M. Thornton
    HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:18, pp:3679-3680 [Journal]
  12. David Gilbert, David R. Westhead, N. Nagano, Janet M. Thornton
    Motif-based searching in TOPS protein topology databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:4, pp:317-326 [Journal]
  13. Andrew P. Harrison, Frances M. G. Pearl, Ian Sillitoe, Tim Slidel, Richard Mott, Janet M. Thornton, Christine A. Orengo
    Recognizing the fold of a protein structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:14, pp:1748-1759 [Journal]
  14. Gemma L. Holliday, Gail J. Bartlett, Daniel E. Almonacid, Noel M. O'Boyle, Peter Murray-Rust, Janet M. Thornton, John B. O. Mitchell
    MACiE: a database of enzyme reaction mechanisms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:23, pp:4315-4316 [Journal]
  15. David T. Jones, William R. Taylor, Janet M. Thornton
    The rapid generation of mutation data matrices from protein sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:3, pp:275-282 [Journal]
  16. Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton
    Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2347-2355 [Journal]
  17. H. P. Shanahan, Janet M. Thornton
    An examination of the conservation of surface patch polarity for proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:14, pp:2197-2204 [Journal]
  18. Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton
    Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:104-109 [Journal]
  19. David Gilbert, David R. Westhead, Juris Viksna, Janet M. Thornton
    A Computer System to Perform Structure Comparison using Representations of Protein Structure. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2002, v:26, n:1, pp:23-30 [Journal]
  20. David Jones, Janet M. Thornton
    Protein fold recognition. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1993, v:7, n:4, pp:439-456 [Journal]
  21. Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert
    Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1998, v:12, n:3, pp:241-257 [Journal]
  22. Irene Nobeli, John B. O. Mitchell, Alexander Alex, Janet M. Thornton
    Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2001, v:22, n:7, pp:673-688 [Journal]
  23. John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton
    BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1999, v:20, n:11, pp:1177-1185 [Journal]
  24. John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton
    BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1999, v:20, n:11, pp:1165-1176 [Journal]
  25. Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo
    Gene3D: structural assignments for the biologist and bioinformaticist alike. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:469-473 [Journal]
  26. Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton
    Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:13, pp:2860-2874 [Journal]
  27. Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton
    The CATH Database provides insights into protein structure/function relationships. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:275-279 [Journal]
  28. Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo
    The CATH database: an extended protein family resource for structural and functional genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:452-455 [Journal]
  29. Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo
    Assigning genomic sequences to CATH. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:277-282 [Journal]
  30. Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo
    A rapid classification protocol for the CATH Domain Database to support structural genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:223-227 [Journal]
  31. Craig T. Porter, Gail J. Bartlett, Janet M. Thornton
    The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:129-133 [Journal]
  32. Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo
    The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:247-251 [Journal]
  33. Catherine Brooksbank, Graham Cameron, Janet M. Thornton
    The European Bioinformatics Institute's data resources: towards systems biology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:46-53 [Journal]
  34. Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton
    PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:266-268 [Journal]
  35. Roman A. Laskowski, James D. Watson, Janet M. Thornton
    ProFunc: a server for predicting protein function from 3D structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:89-93 [Journal]
  36. Gemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, Janet M. Thornton
    MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:515-520 [Journal]
  37. Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo
    The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:291-297 [Journal]

  38. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. [Citation Graph (, )][DBLP]


  39. ELIXIR - A European Infrastructure for Biological Information: Challenges and Progress. [Citation Graph (, )][DBLP]


  40. The Protein Feature Ontology: a tool for the unification of protein feature annotations. [Citation Graph (, )][DBLP]


  41. Metal-MACiE: a database of metals involved in biological catalysis. [Citation Graph (, )][DBLP]


  42. WSsas: a web service for the annotation of functional residues through structural homologues. [Citation Graph (, )][DBLP]


  43. PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins. [Citation Graph (, )][DBLP]


  44. Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. [Citation Graph (, )][DBLP]


  45. Living longer by dieting: analysis of transcriptional response after caloric restriction. [Citation Graph (, )][DBLP]


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