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Janet M. Thornton :
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Janet M. Thornton The proteome and the metabolome. [Citation Graph (0, 0)][DBLP ] ECCB, 2003, pp:237- [Conf ] Janet M. Thornton , Andrew C. R. Martin , Christine A. Orengo , Duncan Milburn , Roman A. Laskowski [Invited Lecture] Protein Folds and Functions. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 1998, pp:- [Conf ] Jonathan A. Barker , Janet M. Thornton Software Engineering Challenges in Bioinformatics. [Citation Graph (0, 0)][DBLP ] ICSE, 2004, pp:12-15 [Conf ] Richard A. George , Ruth V. Spriggs , Janet M. Thornton , Bissan Al-Lazikani , Mark B. Swindells SCOPEC: a database of protein catalytic domains. [Citation Graph (0, 0)][DBLP ] ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:130-136 [Conf ] Janet M. Thornton , David Gilbert , Catherine Brooksbank ISMB/ECCB 2004. [Citation Graph (0, 0)][DBLP ] ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:1-2 [Conf ] Janet M. Thornton , David Gilbert , Catherine Brooksbank ISMB/ECCB 2004 Organization. [Citation Graph (0, 0)][DBLP ] ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:3-5 [Conf ] Juan Garcia Ranea , Alastair Grant , Janet M. Thornton , Christine A. Orengo Microeconomic Principles Explain an Optimal Genome Size in Bacteria. [Citation Graph (0, 0)][DBLP ] Spanish Bioinformatics Conference, 2004, pp:43- [Conf ] David Gilbert , David R. Westhead , Janet M. Thornton , Karine Yvon Une technique déclarative pour filtrer des motifs topologiques de protéines. [Citation Graph (0, 0)][DBLP ] JFPLC, 2000, pp:165-0 [Conf ] Jonathan A. Barker , Janet M. Thornton An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2003, v:19, n:13, pp:1644-1649 [Journal ] James E. Bray , Russell L. Marsden , Stuart C. G. Rison , Alexei Savchenko , Aled M. Edwards , Janet M. Thornton , Christine A. Orengo A practical and robust sequence search strategy for structural genomics target selection. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:14, pp:2288-2295 [Journal ] Carles Ferrer-Costa , H. P. Shanahan , Susan Jones , Janet M. Thornton HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:18, pp:3679-3680 [Journal ] David Gilbert , David R. Westhead , N. Nagano , Janet M. Thornton Motif-based searching in TOPS protein topology databases. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 1999, v:15, n:4, pp:317-326 [Journal ] Andrew P. Harrison , Frances M. G. Pearl , Ian Sillitoe , Tim Slidel , Richard Mott , Janet M. Thornton , Christine A. Orengo Recognizing the fold of a protein structure. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2003, v:19, n:14, pp:1748-1759 [Journal ] Gemma L. Holliday , Gail J. Bartlett , Daniel E. Almonacid , Noel M. O'Boyle , Peter Murray-Rust , Janet M. Thornton , John B. O. Mitchell MACiE: a database of enzyme reaction mechanisms. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:23, pp:4315-4316 [Journal ] David T. Jones , William R. Taylor , Janet M. Thornton The rapid generation of mutation data matrices from protein sequences. [Citation Graph (0, 0)][DBLP ] Computer Applications in the Biosciences, 1992, v:8, n:3, pp:275-282 [Journal ] Richard J. Morris , Rafael Najmanovich , Abdullah Kahraman , Janet M. Thornton Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:10, pp:2347-2355 [Journal ] H. P. Shanahan , Janet M. Thornton An examination of the conservation of surface patch polarity for proteins. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:14, pp:2197-2204 [Journal ] Rafael Najmanovich , Abdellah Allali-Hassani , Richard J. Morris , Ludmila Dombrovsky , Patricia W. Pan , Masoud Vedadi , Alexander N. Plotnikov , Aled M. Edwards , Cheryl H. Arrowsmith , Janet M. Thornton Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2007, v:23, n:2, pp:104-109 [Journal ] David Gilbert , David R. Westhead , Juris Viksna , Janet M. Thornton A Computer System to Perform Structure Comparison using Representations of Protein Structure. [Citation Graph (0, 0)][DBLP ] Computers & Chemistry, 2002, v:26, n:1, pp:23-30 [Journal ] David Jones , Janet M. Thornton Protein fold recognition. [Citation Graph (0, 0)][DBLP ] Journal of Computer-Aided Molecular Design, 1993, v:7, n:4, pp:439-456 [Journal ] Fabio Zuccotto , Andrew C. R. Martin , Roman A. Laskowski , Janet M. Thornton , Ian H. Gilbert Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. [Citation Graph (0, 0)][DBLP ] Journal of Computer-Aided Molecular Design, 1998, v:12, n:3, pp:241-257 [Journal ] Irene Nobeli , John B. O. Mitchell , Alexander Alex , Janet M. Thornton Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. [Citation Graph (0, 0)][DBLP ] Journal of Computational Chemistry, 2001, v:22, n:7, pp:673-688 [Journal ] John B. O. Mitchell , Roman A. Laskowski , Alexander Alex , Mark J. Forster , Janet M. Thornton BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. [Citation Graph (0, 0)][DBLP ] Journal of Computational Chemistry, 1999, v:20, n:11, pp:1177-1185 [Journal ] John B. O. Mitchell , Roman A. Laskowski , Alexander Alex , Janet M. Thornton BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. [Citation Graph (0, 0)][DBLP ] Journal of Computational Chemistry, 1999, v:20, n:11, pp:1165-1176 [Journal ] Daniel W. A. Buchan , Stuart C. G. Rison , James E. Bray , David Lee , Frances M. G. Pearl , Janet M. Thornton , Christine A. Orengo Gene3D: structural assignments for the biologist and bioinformaticist alike. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2003, v:31, n:1, pp:469-473 [Journal ] Nicholas M. Luscombe , Roman A. Laskowski , Janet M. Thornton Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2001, v:29, n:13, pp:2860-2874 [Journal ] Christine A. Orengo , Frances M. G. Pearl , James E. Bray , Annabel E. Todd , A. C. Martin , Loredana Lo Conte , Janet M. Thornton The CATH Database provides insights into protein structure/function relationships. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 1999, v:27, n:1, pp:275-279 [Journal ] Frances M. G. Pearl , C. F. Bennett , James E. Bray , Andrew P. Harrison , Nigel J. Martin , Adrian J. Shepherd , Ian Sillitoe , Janet M. Thornton , Christine A. Orengo The CATH database: an extended protein family resource for structural and functional genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2003, v:31, n:1, pp:452-455 [Journal ] Frances M. G. Pearl , David Lee , James E. Bray , Ian Sillitoe , Annabel E. Todd , Andrew P. Harrison , Janet M. Thornton , Christine A. Orengo Assigning genomic sequences to CATH. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2000, v:28, n:1, pp:277-282 [Journal ] Frances M. G. Pearl , Nigel J. Martin , James E. Bray , Daniel W. A. Buchan , Andrew P. Harrison , David Lee , Gabrielle A. Reeves , Adrian J. Shepherd , Ian Sillitoe , Annabel E. Todd , Janet M. Thornton , Christine A. Orengo A rapid classification protocol for the CATH Domain Database to support structural genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2001, v:29, n:1, pp:223-227 [Journal ] Craig T. Porter , Gail J. Bartlett , Janet M. Thornton The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:129-133 [Journal ] Frances M. G. Pearl , Annabel E. Todd , Ian Sillitoe , Mark Dibley , Oliver Redfern , Tony E. Lewis , Christopher Bennett , Russell L. Marsden , Alastair Grant , David Lee , Adrian Akpor , Michael Maibaum , Andrew P. Harrison , Timothy Dallman , Gabrielle A. Reeves , Ilhem Diboun , Sarah Addou , Stefano Lise , Caroline Johnston , Antonio Sillero , Janet M. Thornton , Christine A. Orengo The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:247-251 [Journal ] Catherine Brooksbank , Graham Cameron , Janet M. Thornton The European Bioinformatics Institute's data resources: towards systems biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:46-53 [Journal ] Roman A. Laskowski , Victor V. Chistyakov , Janet M. Thornton PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:266-268 [Journal ] Roman A. Laskowski , James D. Watson , Janet M. Thornton ProFunc: a server for predicting protein function from 3D structure. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:89-93 [Journal ] Gemma L. Holliday , Daniel E. Almonacid , Gail J. Bartlett , Noel M. O'Boyle , James W. Torrance , Peter Murray-Rust , John B. O. Mitchell , Janet M. Thornton MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:515-520 [Journal ] Lesley H. Greene , Tony E. Lewis , Sarah Addou , Alison Cuff , Timothy Dallman , Mark Dibley , Oliver Redfern , Frances M. G. Pearl , Rekha Nambudiry , Adam Reid , Ian Sillitoe , Corin Yeats , Janet M. Thornton , Christine A. Orengo The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:291-297 [Journal ] Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. [Citation Graph (, )][DBLP ] ELIXIR - A European Infrastructure for Biological Information: Challenges and Progress. [Citation Graph (, )][DBLP ] The Protein Feature Ontology: a tool for the unification of protein feature annotations. [Citation Graph (, )][DBLP ] Metal-MACiE: a database of metals involved in biological catalysis. [Citation Graph (, )][DBLP ] WSsas: a web service for the annotation of functional residues through structural homologues. [Citation Graph (, )][DBLP ] PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins. [Citation Graph (, )][DBLP ] Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. [Citation Graph (, )][DBLP ] Living longer by dieting: analysis of transcriptional response after caloric restriction. [Citation Graph (, )][DBLP ] Search in 0.005secs, Finished in 0.008secs