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Ivo L. Hofacker: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Ulrike Mückstein, Ivo L. Hofacker, Peter F. Stadler
    Stochastic pairwise alignments. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:153-160 [Conf]
  2. Jan Cupal, Ivo L. Hofacker, Peter F. Stadler
    Dynamic Programming Algorithm for the Density of States of RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:184-186 [Conf]
  3. Ivo L. Hofacker, Peter F. Stadler
    Memory Efficient Folding Algorithms for Circular RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2005, pp:15-25 [Conf]
  4. Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits
    Conserved RNA secondary structures in viral genomes: A survey. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:57-62 [Conf]
  5. Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker
    Thermodynamics of RNA-RNA Binding. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2005, pp:3-13 [Conf]
  6. Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler
    Conserved secondary structures in hepatitis B virus DNA. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:73-79 [Conf]
  7. C. Thurner, Ivo L. Hofacker, Peter F. Stadler
    Conserved RNA Pseudoknots. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2004, pp:207-216 [Conf]
  8. G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler
    An efficient potential for protein sequence design. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:107-112 [Conf]
  9. Ivo L. Hofacker, Peter F. Stadler
    The Partition Function Variant of Sankoff's Algorithm. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science, 2004, pp:728-735 [Conf]
  10. Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz
    Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. [Citation Graph (0, 0)][DBLP]
    KDD, 1996, pp:20-25 [Conf]
  11. Stephan H. F. Bernhart, Ivo L. Hofacker, Peter F. Stadler
    Local RNA base pairing probabilities in large sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:5, pp:614-615 [Journal]
  12. Ivo L. Hofacker, Stephan H. F. Bernhart, Peter F. Stadler
    Alignment of RNA base pairing probability matrices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:14, pp:2222-2227 [Journal]
  13. Ivo L. Hofacker, Barbara Priwitzer, Peter F. Stadler
    Prediction of locally stable RNA secondary structures for genome-wide surveys. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:186-190 [Journal]
  14. Ivo L. Hofacker, Peter F. Stadler
    Memory efficient folding algorithms for circular RNA secondary structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1172-1176 [Journal]
  15. Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits
    Conserved RNA secondary structures in viral genomes: a survey. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:10, pp:1495-1499 [Journal]
  16. Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker
    Thermodynamics of RNA-RNA binding. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1177-1182 [Journal]
  17. Christian V. Forst, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
    Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:67- [Journal]
  18. Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler
    Multiple sequence alignments of partially coding nucleic acid sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:160- [Journal]
  19. Ivo L. Hofacker, Peter F. Stadler
    Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1999, v:23, n:3-4, pp:401-414 [Journal]
  20. Ivo L. Hofacker, Peter Schuster, Peter F. Stadler
    Combinatorics of RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1998, v:88, n:1-3, pp:207-237 [Journal]
  21. Martin Fekete, Ivo L. Hofacker, Peter F. Stadler
    Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:171-182 [Journal]
  22. Ivo L. Hofacker
    Vienna RNA secondary structure server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3429-3431 [Journal]
  23. Paul W. C. Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker
    miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:135-139 [Journal]
  24. Christina Witwer, Ivo L. Hofacker, Peter F. Stadler
    Prediction of Consensus RNA Secondary Structures Including Pseudoknots. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:2, pp:66-77 [Journal]
  25. Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
    Visualization of Barrier Tree Sequences. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Vis. Comput. Graph., 2006, v:12, n:5, pp:781-788 [Journal]
  26. Christoph Flamm, Ivo L. Hofacker, Bärbel M. R. Stadler, Peter F. Stadler
    Saddles and Barrier in Landscapes of Generalized Search Operators. [Citation Graph (0, 0)][DBLP]
    FOGA, 2007, pp:194-212 [Conf]

  27. 2D Projections of RNA Folding Landscapes. [Citation Graph (, )][DBLP]


  28. Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs. [Citation Graph (, )][DBLP]


  29. Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. [Citation Graph (, )][DBLP]


  30. SnoReport: computational identification of snoRNAs with unknown targets. [Citation Graph (, )][DBLP]


  31. RNAplex: a fast tool for RNA-RNA interaction search. [Citation Graph (, )][DBLP]


  32. RNAsnoop: efficient target prediction for H/ACA snoRNAs. [Citation Graph (, )][DBLP]


  33. RNAalifold: improved consensus structure prediction for RNA alignments. [Citation Graph (, )][DBLP]


  34. Strategies for measuring evolutionary conservation of RNA secondary structures. [Citation Graph (, )][DBLP]


  35. Hybridization thermodynamics of NimbleGen Microarrays. [Citation Graph (, )][DBLP]


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