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Richa Agarwala: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Richa Agarwala, David Fernández-Baca
    A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed [Citation Graph (0, 0)][DBLP]
    FOCS, 1993, pp:140-147 [Conf]
  2. Richa Agarwala, David Fernández-Baca
    Solving the Lagrangian Dual when the Number of Constraints is Fixed. [Citation Graph (0, 0)][DBLP]
    FSTTCS, 1992, pp:164-175 [Conf]
  3. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena
    Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:1-2 [Conf]
  4. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    SODA, 1997, pp:390-399 [Conf]
  5. Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup
    On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). [Citation Graph (0, 0)][DBLP]
    SODA, 1996, pp:365-372 [Conf]
  6. Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
    Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. [Citation Graph (0, 0)][DBLP]
    SODA, 1999, pp:840-841 [Conf]
  7. Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
    WindowMasker: window-based masker for sequenced genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:2, pp:134-141 [Journal]
  8. Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
    Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:3-44 [Journal]
  9. Richa Agarwala, David Fernández-Baca
    Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 1996, v:7, n:1, pp:11-22 [Journal]
  10. Richa Agarwala, David Fernández-Baca
    Weighted Search in the Plane. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1995, v:54, n:2, pp:97-100 [Journal]
  11. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:275-296 [Journal]
  12. Richa Agarwala, David Fernández-Baca, Giora Slutzki
    Fast Algorithms for Inferring Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:3, pp:397-407 [Journal]
  13. Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup
    On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1999, v:28, n:3, pp:1073-1085 [Journal]
  14. Richa Agarwala, David Fernández-Baca
    A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1994, v:23, n:6, pp:1216-1224 [Journal]
  15. Richa Agarwala, David Fernández-Baca
    Weighted Multidimensional Search and Its Application to Convex Optimization. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1996, v:25, n:1, pp:83-99 [Journal]
  16. Jason S. Papadopoulos, Richa Agarwala
    COBALT: constraint-based alignment tool for multiple protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1073-1079 [Journal]
  17. Alejandro A. Schäffer, Edward Stallknecht Rice, William Cook, Richa Agarwala
    rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1156-1158 [Journal]

  18. Improved BLAST searches using longer words for protein seeding. [Citation Graph (, )][DBLP]


  19. Database indexing for production MegaBLAST searches. [Citation Graph (, )][DBLP]


  20. Database indexing for production MegaBLAST searches. [Citation Graph (, )][DBLP]


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