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Alexander E. Kel: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Elena A. Ananko, Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
    WWWTRRD: Hypertext Information System an Transcription Regulation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:153-155 [Conf]
  2. I. V. Ischenko, Alexey V. Kochetov, Alexander E. Kel, Nikolay A. Kolchanov, L. L. Kisselev
    Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:124-129 [Conf]
  3. Olga V. Kel-Margoulis, Igor Deineko, Ingmar Reuter, Edgar Wingender, Alexander E. Kel
    TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:185-187 [Conf]
  4. Alexander E. Kel, Igor Deineko, Olga V. Kel-Margoulis, Edgar Wingender, Vadim Ratner
    Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:107-114 [Conf]
  5. Alexander E. Kel, Olga V. Kel-Margoulis, Vladimir N. Babenko, Nikolay A. Kolchanov, Edgar Wingender
    Combinatorial identification of promoters induced upon immune cell activation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  6. Alexander E. Kel, O. V. Kel, I. V. Ischenko, Nikolay A. Kolchanov, Holger Karas, Edgar Wingender, Heinz Sklenar
    TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:113-117 [Conf]
  7. Alexander E. Kel, Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender
    ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:96-101 [Conf]
  8. Alexander E. Kel, Tatiana Konovalova, Tagir Valeev, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender
    Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2005, pp:63-75 [Conf]
  9. Alexander E. Kel, O. V. Kel, Oleg V. Vishnevsky, Mikhail P. Ponomarenko, I. V. Ischenko, Holger Karas, Edgar Wingender, Nikolay A. Kolchanov, Heinz Sklenar
    TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics - Selected Papers, 1996, pp:99-105 [Conf]
  10. Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender
    E2F composite units in promoters of cell cycle genes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:148-154 [Conf]
  11. Alexander E. Kel, M. Philipenko, Vladimir N. Babenko, Nikolay A. Kolchanov
    Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:238-240 [Conf]
  12. Alexander E. Kel, Andrey A. Ptitsyn, Vladimir N. Babenko, Sebastian Meier-Ewert, Hans Lehrach
    A genetic algorithm for designing gene family specific oligonucleotide sets used for hybridization. The G Protein-coupled receptor Protein superfamily.. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:53-55 [Conf]
  13. Ellen Gößling, Olga V. Kel-Margoulis, Alexander E. Kel, Edgar Wingender
    MATCHTM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:158-161 [Conf]
  14. Alexander E. Kel, Yuri Tikunov, Nico Voss, Edgar Wingender
    Recognition of multiple patterns in unaligned sets of sequences. Comparison of kernel clustering method with other methods. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:63-68 [Conf]
  15. Alexander E. Kel, Nico Voss, Tatiana Konovalova, Dmitri Tchekmenev, P. Wabnitz, Olga V. Kel-Margoulis, Edgar Wingender
    From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2004, pp:189-198 [Conf]
  16. Y. V. Kondrakhin, F. A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi
    Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:247-250 [Conf]
  17. Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
    Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD). [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:153-154 [Conf]
  18. Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar
    Identification of the significant conformational features of functional sites in B-DNA. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:171- [Conf]
  19. Maciej Swat, Alexander E. Kel, Szymon M. Kielbasa, Hanspeter Herzel
    Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:147-152 [Conf]
  20. Yuri Tikunov, Alexander E. Kel
    Kernel Method for Estimation of Functional Site Local Consensi: Classification of Transcription Initiation Sites in Eukaryotic Genes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:83-88 [Conf]
  21. Edgar Wingender, Xin Chen, T. Heinemeyer, Alexander E. Kel, Ines Liebich, T. Meinhardt
    A hierarchy of databases for modeling gene regulatory mechanisms. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  22. O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov
    Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1995, pp:42-51 [Conf]
  23. Tatiana Konovalova, Tagir Valeev, Evgeny Cheremushkin, Alexander E. Kel
    Composite Module Analyst: Tool for Prediction of DNA Transcription Regulation. Testing on Simulated Data. [Citation Graph (0, 0)][DBLP]
    ICNC (2), 2005, pp:1202-1205 [Conf]
  24. Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov
    Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:197-205 [Conf]
  25. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
    GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. [Citation Graph (0, 0)][DBLP]
    ISMB, 1998, pp:95-104 [Conf]
  26. Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov
    Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:206-214 [Conf]
  27. Evgeny Cheremushkin, Alexander E. Kel
    Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:291-302 [Conf]
  28. Olga V. Kel-Margoulis, T. G. Ivanova, Edgar Wingender, Alexander E. Kel
    Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:187-198 [Conf]
  29. Alexander E. Kel, Yuri Tikunov, Nico Voss, Jürgen Borlak, Edgar Wingender
    Application of Kernel Method to Reveal Subtypes of TF Binding Motifs. [Citation Graph (0, 0)][DBLP]
    Regulatory Genomics, 2004, pp:42-51 [Conf]
  30. Alexander E. Kel, Tatiana Konovalova, T. Waleev, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender
    Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1190-1197 [Journal]
  31. Alexander E. Kel, Andrey A. Ptitsyn, Vladimir N. Babenko, Sebastian Meier-Ewert, Hans Lehrach
    A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:259-270 [Journal]
  32. Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov
    SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:6, pp:617-627 [Journal]
  33. Alexander E. Kel, Yuri Tikunov, Nico Voss, Edgar Wingender
    Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:10, pp:1512-1516 [Journal]
  34. Y. V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi
    Eukaryotic promoter recognition by binding sites for transcription factors. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:5, pp:477-488 [Journal]
  35. Maciej Swat, Alexander E. Kel, Hanspeter Herzel
    Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:10, pp:1506-1511 [Journal]
  36. Olga V. Kel-Margoulis, Dmitri Tchekmenev, Alexander E. Kel, Ellen Gößling, Klaus Hornischer, Birgit Lewicki-Potapov, Edgar Wingender
    Composition-sensitive analysis of the human genome for regulatory signals. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2003, v:3, n:, pp:13- [Journal]
  37. Ekaterina Shelest, Alexander E. Kel, Ellen Gößling, Edgar Wingender
    Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2003, v:3, n:, pp:7- [Journal]
  38. Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano
    Large-scale collection and characterization of promoters of human and mouse genes. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:4, n:, pp:- [Journal]
  39. T. Heinemeyer, Xin Chen, Holger Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Ines Liebich, T. Meinhardt, Ingmar Reuter, Frank Schacherer, Edgar Wingender
    Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:318-322 [Journal]
  40. T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov
    Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:362-367 [Journal]
  41. Olga V. Kel-Margoulis, Alexander E. Kel, Ingmar Reuter, Igor Deineko, Edgar Wingender
    TRANSCompel®: a database on composite regulatory elements in eukaryotic genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:332-334 [Journal]
  42. Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, Alexander E. Kel
    COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:311-315 [Journal]
  43. Alexander E. Kel, Ellen Gößling, Ingmar Reuter, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender
    MATCHTM: a tool for searching transcription factor binding sites in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3576-3579 [Journal]
  44. Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
    Transcription Regulatory Regions Database (TRRD): its status in 1999. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:303-306 [Journal]
  45. Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton
    Transcription Regulatory Regions Database (TRRD): its status in 2000. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:298-301 [Journal]
  46. V. Matys, Ellen Fricke, R. Geffers, Ellen Gößling, Martin Haubrock, R. Hehl, Klaus Hornischer, Dagmar Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Dorothee-U. Kloos, Sigrid Land, Birgit Lewicki-Potapov, Holger Michael, Richard Münch, Ingmar Reuter, Stella Rotert, H. Saxel, Maurice Scheer, S. Thiele, Edgar Wingender
    TRANSFAC®: transcriptional regulation, from patterns to profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:374-378 [Journal]
  47. Edgar Wingender, Alexander E. Kel, Olga V. Kel-Margoulis, Holger Karas, T. Heinemeyer, P. Dietze, R. Knüppel, Aida G. Romashchenko, Nikolay A. Kolchanov
    TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:265-268 [Journal]
  48. V. Matys, Olga V. Kel-Margoulis, Ellen Fricke, Ines Liebich, Sigrid Land, A. Barre-Dirrie, Ingmar Reuter, D. Chekmenev, Mathias Krull, Klaus Hornischer, Nico Voss, P. Stegmaier, Birgit Lewicki-Potapov, H. Saxel, Alexander E. Kel, Edgar Wingender
    TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:108-110 [Journal]
  49. Igor V. Deyneko, Björn Bredohl, Daniel Wesely, Yulia M. Kalybaeva, Alexander E. Kel, Helmut Blöcker, Gerhard Kauer
    FeatureScan: revealing property-dependent similarity of nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:591-595 [Journal]
  50. Xin Chen, Jian-Min Wu, Klaus Hornischer, Alexander E. Kel, Edgar Wingender
    TiProD: the Tissue-specific Promoter Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:104-107 [Journal]
  51. Mathias Krull, Susanne Pistor, Nico Voss, Alexander E. Kel, Ingmar Reuter, Deborah Kronenberg, Holger Michael, Knut Schwarzer, Anatolij Potapov, Claudia Choi, Olga V. Kel-Margoulis, Edgar Wingender
    TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:546-551 [Journal]
  52. T. Waleev, D. Shtokalo, Tatiana Konovalova, Nico Voss, Evgeny Cheremushkin, P. Stegmaier, Olga V. Kel-Margoulis, Edgar Wingender, Alexander E. Kel
    Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:541-545 [Journal]
  53. Fedor Kolpakov, Vladimir Poroikov, Ruslan Sharipov, Yury Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel
    CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:550-556 [Journal]

  54. Supervised Posteriors for DNA-motif Classification. [Citation Graph (, )][DBLP]


  55. Building a knowledge base for systems pathology. [Citation Graph (, )][DBLP]


  56. Beyond microarrays: Finding key transcription factors controlling signal transduction pathways. [Citation Graph (, )][DBLP]


  57. Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates. [Citation Graph (, )][DBLP]


  58. Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies. [Citation Graph (, )][DBLP]


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