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Sean R. Eddy :
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Sean R. Eddy [Invited Lecture] Genome sequence analysis and profile hidden Markov models. [Citation Graph (0, 0)][DBLP ] German Conference on Bioinformatics, 1998, pp:- [Conf ] Henry Ellingworth , Sean R. Eddy RNA structure alignment on a massively parallel computer. [Citation Graph (0, 0)][DBLP ] HPCN Europe, 1995, pp:502-507 [Conf ] Sean R. Eddy Multiple Alignment Using Hidden Markov Models. [Citation Graph (0, 0)][DBLP ] ISMB, 1995, pp:114-120 [Conf ] Sean R. Eddy Profile hidden Markov models. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 1998, v:14, n:9, pp:755-763 [Journal ] Elena Rivas , Sean R. Eddy Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2000, v:16, n:7, pp:583-605 [Journal ] Elena Rivas , Sean R. Eddy The language of RNA: a formal grammar that includes pseudoknots. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2000, v:16, n:4, pp:334-340 [Journal ] Christian M. Zmasek , Sean R. Eddy A simple algorithm to infer gene duplication and speciation events on a gene tree. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2001, v:17, n:9, pp:821-828 [Journal ] Christian M. Zmasek , Sean R. Eddy ATV: display and manipulation of annotated phylogenetic. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2001, v:17, n:4, pp:383-384 [Journal ] Sean R. Eddy A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2002, v:3, n:, pp:18- [Journal ] Robin D. Dowell , Sean R. Eddy Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2004, v:5, n:, pp:71- [Journal ] Robin D. Dowell , Rodney M. Jokerst , Allen Day , Sean R. Eddy , Lincoln Stein The Distributed Annotation System. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2001, v:2, n:, pp:7- [Journal ] Robert J. Klein , Sean R. Eddy RSEARCH: Finding homologs of single structured RNA sequences. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2003, v:4, n:, pp:44- [Journal ] Elena Rivas , Sean R. Eddy Noncoding RNA gene detection using comparative sequence analysis. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2001, v:2, n:, pp:8- [Journal ] Christian M. Zmasek , Sean R. Eddy RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. [Citation Graph (0, 0)][DBLP ] BMC Bioinformatics, 2002, v:3, n:, pp:14- [Journal ] Sean R. Eddy , Graeme J. Mitchison , Richard Durbin Maximum Discrimination Hidden Markov Models of Sequence Consensus. [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 1995, v:2, n:1, pp:9-23 [Journal ] Alex Bateman , Ewan Birney , Lorenzo Cerutti , Richard Durbin , Laurence Etwiller , Sean R. Eddy , Sam Griffiths-Jones , Kevin L. Howe , Mhairi Marshall , Erik L. L. Sonnhammer The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2002, v:30, n:1, pp:276-280 [Journal ] Alex Bateman , Ewan Birney , Richard Durbin , Sean R. Eddy , Robert D. Finn , Erik L. L. Sonnhammer Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 1999, v:27, n:1, pp:260-262 [Journal ] Alex Bateman , Ewan Birney , Richard Durbin , Sean R. Eddy , Kevin L. Howe , Erik L. L. Sonnhammer The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2000, v:28, n:1, pp:263-266 [Journal ] Alex Bateman , Lachlan Coin , Richard Durbin , Robert D. Finn , Volker Hollich , Sam Griffiths-Jones , Ajay Khanna , Mhairi Marshall , Simon Moxon , Erik L. L. Sonnhammer , David J. Studholme , Corin Yeats , Sean R. Eddy The Pfam protein families database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:138-141 [Journal ] Sam Griffiths-Jones , Alex Bateman , Mhairi Marshall , Ajay Khanna , Sean R. Eddy Rfam: an RNA family database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2003, v:31, n:1, pp:439-441 [Journal ] Erik L. L. Sonnhammer , Sean R. Eddy , Ewan Birney , Alex Bateman , Richard Durbin Pfam: multiple sequence alignments and HMM-profiles of protein domains. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 1998, v:26, n:1, pp:320-322 [Journal ] Sam Griffiths-Jones , Simon Moxon , Mhairi Marshall , Ajay Khanna , Sean R. Eddy , Alex Bateman Rfam: annotating non-coding RNAs in complete genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:121-124 [Journal ] Robert D. Finn , Jaina Mistry , Benjamin Schuster-Böckler , Sam Griffiths-Jones , Volker Hollich , Timo Lassmann , Simon Moxon , Mhairi Marshall , Ajay Khanna , Richard Durbin , Sean R. Eddy , Erik L. L. Sonnhammer , Alex Bateman Pfam: clans, web tools and services. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:247-251 [Journal ] Infernal 1.0: inference of RNA alignments. [Citation Graph (, )][DBLP ] A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. [Citation Graph (, )][DBLP ] Infernal 1.0: inference of RNA alignments. [Citation Graph (, )][DBLP ] Local RNA structure alignment with incomplete sequence. [Citation Graph (, )][DBLP ] Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. [Citation Graph (, )][DBLP ] Search in 0.002secs, Finished in 0.305secs