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Sean R. Eddy: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Sean R. Eddy
    [Invited Lecture] Genome sequence analysis and profile hidden Markov models. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  2. Henry Ellingworth, Sean R. Eddy
    RNA structure alignment on a massively parallel computer. [Citation Graph (0, 0)][DBLP]
    HPCN Europe, 1995, pp:502-507 [Conf]
  3. Sean R. Eddy
    Multiple Alignment Using Hidden Markov Models. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:114-120 [Conf]
  4. Sean R. Eddy
    Profile hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:9, pp:755-763 [Journal]
  5. Elena Rivas, Sean R. Eddy
    Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:7, pp:583-605 [Journal]
  6. Elena Rivas, Sean R. Eddy
    The language of RNA: a formal grammar that includes pseudoknots. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:4, pp:334-340 [Journal]
  7. Christian M. Zmasek, Sean R. Eddy
    A simple algorithm to infer gene duplication and speciation events on a gene tree. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:9, pp:821-828 [Journal]
  8. Christian M. Zmasek, Sean R. Eddy
    ATV: display and manipulation of annotated phylogenetic. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:4, pp:383-384 [Journal]
  9. Sean R. Eddy
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2002, v:3, n:, pp:18- [Journal]
  10. Robin D. Dowell, Sean R. Eddy
    Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:71- [Journal]
  11. Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein
    The Distributed Annotation System. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2001, v:2, n:, pp:7- [Journal]
  12. Robert J. Klein, Sean R. Eddy
    RSEARCH: Finding homologs of single structured RNA sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:44- [Journal]
  13. Elena Rivas, Sean R. Eddy
    Noncoding RNA gene detection using comparative sequence analysis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2001, v:2, n:, pp:8- [Journal]
  14. Christian M. Zmasek, Sean R. Eddy
    RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2002, v:3, n:, pp:14- [Journal]
  15. Sean R. Eddy, Graeme J. Mitchison, Richard Durbin
    Maximum Discrimination Hidden Markov Models of Sequence Consensus. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:1, pp:9-23 [Journal]
  16. Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:276-280 [Journal]
  17. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer
    Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:260-262 [Journal]
  18. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:263-266 [Journal]
  19. Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy
    The Pfam protein families database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:138-141 [Journal]
  20. Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy
    Rfam: an RNA family database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:439-441 [Journal]
  21. Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin
    Pfam: multiple sequence alignments and HMM-profiles of protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:320-322 [Journal]
  22. Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman
    Rfam: annotating non-coding RNAs in complete genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:121-124 [Journal]
  23. Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
    Pfam: clans, web tools and services. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:247-251 [Journal]

  24. Infernal 1.0: inference of RNA alignments. [Citation Graph (, )][DBLP]


  25. A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. [Citation Graph (, )][DBLP]


  26. Infernal 1.0: inference of RNA alignments. [Citation Graph (, )][DBLP]


  27. Local RNA structure alignment with incomplete sequence. [Citation Graph (, )][DBLP]


  28. Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. [Citation Graph (, )][DBLP]


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