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Henning Hermjakob: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler
    SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  2. Kai J. Runte, Henning Hermjakob, Rolf Apweiler
    Towards a New Curation Environment for the TrEMBL Database. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:220- [Conf]
  3. Arno Velds, Henning Hermjakob, Rolf Apweiler
    Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:229-230 [Conf]
  4. Henning Hermjakob, Robert Giegerich, Walter Arnold
    RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:131-139 [Conf]
  5. Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler
    The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  6. Samuel Kerrien, Henning Hermjakob
    Development and implementation of the PSI MI standard for molecular interaction. [Citation Graph (0, 0)][DBLP]
    Winter Simulation Conference, 2006, pp:1587-1594 [Conf]
  7. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  8. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  9. Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler
    Swissknife - 'lazy parsing' of SWISS-PROT entries. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:9, pp:771-772 [Journal]
  10. Philip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler
    Dasty and UniProt DAS: a perfect pair for protein feature visualization. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:14, pp:3198-3199 [Journal]
  11. Paul Kersey, Henning Hermjakob, Rolf Apweiler
    VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:1048-1049 [Journal]
  12. Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler
    A comparison of signal sequence prediction methods using a test set of signal peptides. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:8, pp:741-742 [Journal]
  13. Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
    The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:97- [Journal]
  14. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  15. T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, F. A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov
    Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:362-367 [Journal]
  16. Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
    IntAct: an open source molecular interaction database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:452-455 [Journal]
  17. Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler
    PRIDE: a public repository of protein and peptide identifications for the proteomics community. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:659-663 [Journal]
  18. Samuel Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, Emily Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, J. Risse, K. Robbe, Bernd Roechert, D. Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob
    IntAct - open source resource for molecular interaction data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:561-565 [Journal]
  19. Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
    Analysing latent topics in large-scale proteomics. [Citation Graph (0, 0)][DBLP]
    LWA, 2007, pp:73-80 [Conf]

  20. ENFIN - An Integrative Structure for Systems Biology. [Citation Graph (, )][DBLP]


  21. EBI Proteomics Services. [Citation Graph (, )][DBLP]


  22. An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. [Citation Graph (, )][DBLP]


  23. The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world. [Citation Graph (, )][DBLP]


  24. Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. [Citation Graph (, )][DBLP]


  25. InteroPORC: automated inference of highly conserved protein interaction networks. [Citation Graph (, )][DBLP]


  26. Dasty2, an Ajax protein DAS client. [Citation Graph (, )][DBLP]


  27. The Protein Feature Ontology: a tool for the unification of protein feature annotations. [Citation Graph (, )][DBLP]


  28. The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. [Citation Graph (, )][DBLP]


  29. OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology. [Citation Graph (, )][DBLP]


  30. InteroPORC: an automated tool to predict highly conserved protein interaction networks. [Citation Graph (, )][DBLP]


  31. Integrating biological data - the Distributed Annotation System. [Citation Graph (, )][DBLP]


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