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Benno Schwikowski: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Benno Schwikowski, Martin Vingron
    Attacking Generalized tree Alignment by a Deferred Path Heuristic. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:302-304 [Conf]
  2. Benno Schwikowski, Martin Vingron
    A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics - Selected Papers, 1996, pp:115-124 [Conf]
  3. Benno Schwikowski
    Algorithmic Challenges in Mass Spectrometry and Systems Biology. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung (Ergänzungsband), 2002, pp:66-66 [Conf]
  4. Mathieu Blanchette, Benno Schwikowski, Martin Tompa
    An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:37-45 [Conf]
  5. Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel
    Discovering regulatory and signalling circuits in molecular interaction networks. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:233-240 [Conf]
  6. David J. Reiss, Benno Schwikowski
    Predicting protein-peptide interactions via a network-based motif sampler. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:274-282 [Conf]
  7. Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini
    Towards optimally multiplexed applications of universal DNA tag systems. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:48-56 [Conf]
  8. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
    The restriction scaffold problem. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:58-66 [Conf]
  9. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
    Universal DNA tag systems: a combinatorial design scheme. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:65-75 [Conf]
  10. Benno Schwikowski, Martin Vingron
    The deferred path heuristic for the generalized tree alignment problem. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:257-266 [Conf]
  11. Tero Aittokallio, Benno Schwikowski
    Graph-based methods for analysing networks in cell biology. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2006, v:7, n:3, pp:243-255 [Journal]
  12. Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio
    GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:3, pp:394-396 [Journal]
  13. David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski
    Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:154- [Journal]
  14. Benno Schwikowski, Ewald Speckenmeyer
    On enumerating all minimal solutions of feedback problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2002, v:117, n:1-3, pp:253-265 [Journal]
  15. Benno Schwikowski, Martin Vingron
    Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2003, v:127, n:1, pp:95-117 [Journal]
  16. Mathieu Blanchette, Benno Schwikowski, Martin Tompa
    Algorithms for Phylogenetic Footprinting. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:211-223 [Journal]
  17. Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini
    Towards Optimally Multiplexed Applications of Universal Arrays. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:476-492 [Journal]
  18. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
    The Restriction Scaffold Problem. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:385-398 [Journal]
  19. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
    Universal DNA Tag Systems: A Combinatorial Design Scheme. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:503-519 [Journal]
  20. Benno Schwikowski, Martin Vingron
    The Deferred Path Heuristic for the Generalized Tree Alignment Problem. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:415-431 [Journal]

  21. Indexing and Searching a Mass Spectrometry Database. [Citation Graph (, )][DBLP]


  22. Phylogenetic distances are encoded in networks of interacting pathways. [Citation Graph (, )][DBLP]


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