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Rolf Backofen: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Rolf Backofen
    Introduction to Bioinformatics. [Citation Graph (0, 0)][DBLP]
    ACL (Companion Volume), 2001, pp:4- [Conf]
  2. Rolf Backofen
    On the Decidability of Functional Uncertainty. [Citation Graph (0, 0)][DBLP]
    ACL, 1993, pp:201-208 [Conf]
  3. Rolf Backofen, Gert Smolka
    A Complete and Recursive Feature Theory. [Citation Graph (0, 0)][DBLP]
    ACL, 1993, pp:193-200 [Conf]
  4. Günter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun
    An Information Extraction Core System for Real World German Text Processing. [Citation Graph (0, 0)][DBLP]
    ANLP, 1997, pp:209-216 [Conf]
  5. Rolf Backofen, Ralf Treinen
    How to Win a Game with Features. [Citation Graph (0, 0)][DBLP]
    CCL, 1994, pp:320-335 [Conf]
  6. Sven Siebert, Rolf Backofen
    A New Distance Measure of RNA Ensembles and Its Application to Phylogenetic Tree Construction. [Citation Graph (0, 0)][DBLP]
    CIBCB, 2005, pp:150-157 [Conf]
  7. Hans Uszkoreit, Rolf Backofen, Stephan Busemann, Abdel Kader Diagne, Elizabeth A. Hinkelman, Walter Kasper, Bernd Kiefer, Hans-Ulrich Krieger, Klaus Netter, Günter Neumann, Stephan Oepen, Stephen P. Spackman
    DISCO-An HPSG-based NLP System and its Application for Appointment Scheduling Project Note. [Citation Graph (0, 0)][DBLP]
    COLING, 1994, pp:436-440 [Conf]
  8. Rolf Backofen
    Constraint Techniques for Solving the Protein Structure Prediction Problem. [Citation Graph (0, 0)][DBLP]
    CP, 1998, pp:72-86 [Conf]
  9. Rolf Backofen, Sebastian Will
    Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores. [Citation Graph (0, 0)][DBLP]
    CP, 2001, pp:494-508 [Conf]
  10. Rolf Backofen, Sebastian Will
    Excluding Symmetries in Constraint-Based Search. [Citation Graph (0, 0)][DBLP]
    CP, 1999, pp:73-87 [Conf]
  11. Rolf Backofen
    An Upper Bound for Number of Contacts in the HP-Model on the Face-Centered-Cubic Lattice (FCC). [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:277-292 [Conf]
  12. Rolf Backofen, Anke Busch
    Computational Design of New and Recombinant Selenoproteins. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:270-284 [Conf]
  13. Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann
    Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. [Citation Graph (0, 0)][DBLP]
    CPM, 2006, pp:246-257 [Conf]
  14. Rolf Backofen, Sebastian Will
    Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the FCC. [Citation Graph (0, 0)][DBLP]
    CPM, 2001, pp:257-272 [Conf]
  15. Rolf Backofen, Peter Clote
    Evolution as a Computational Engine. [Citation Graph (0, 0)][DBLP]
    CSL, 1997, pp:35-55 [Conf]
  16. Rolf Backofen
    Controlling Functional Uncertainty. [Citation Graph (0, 0)][DBLP]
    ECAI, 1996, pp:557-561 [Conf]
  17. Rolf Backofen
    Using constraint programming for lattice protein folding. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:123- [Conf]
  18. Rolf Backofen, N. S. Narayanaswamy, Firas Swidan
    Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:135-140 [Conf]
  19. Rolf Backofen, Sebastian Will
    Structure prediction in an HP-type lattice with an extended alphabet. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  20. Rolf Backofen, Sebastian Will, Peter Clote
    Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:93-106 [Conf]
  21. Rainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen
    Feature Based Representation and Detection of Transcription Factor Binding Sites. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2004, pp:43-52 [Conf]
  22. Sven Siebert, Rolf Backofen
    MARNA: A server for multiple alignment of RNAs. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:135-140 [Conf]
  23. Rolf Backofen, Sebastian Will
    A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods. [Citation Graph (0, 0)][DBLP]
    ICLP, 2003, pp:49-71 [Conf]
  24. Rolf Backofen
    RNA-Sequence-Structure Properties and Selenocysteine Insertion. [Citation Graph (0, 0)][DBLP]
    IDA, 2001, pp:187-197 [Conf]
  25. Rolf Backofen, Lutz Euler, Günther Görz
    Towards the Integration of Functions, Relations and Types in an AI Programming Language. [Citation Graph (0, 0)][DBLP]
    GWAI, 1990, pp:297-306 [Conf]
  26. Rolf Backofen, Lutz Euler, Günther Görz
    Distributed Disjunctions for LIFE. [Citation Graph (0, 0)][DBLP]
    PDK, 1991, pp:161-170 [Conf]
  27. Rolf Backofen
    Regular Path Expression in Feature Logic. [Citation Graph (0, 0)][DBLP]
    RTA, 1993, pp:121-135 [Conf]
  28. Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann
    Normalized Similarity of RNA Sequences. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2005, pp:360-369 [Conf]
  29. Rolf Backofen, Sven Siebert
    Fast Detection of Common Sequence Structure Patterns in RNAs. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2004, pp:79-92 [Conf]
  30. Rolf Backofen, N. S. Narayanaswamy, Firas Swidan
    On the Complexity of Protein Similarity Search under mRNA Structure Constraints. [Citation Graph (0, 0)][DBLP]
    STACS, 2002, pp:274-286 [Conf]
  31. Rolf Backofen, Harald Trost, Hans Uszkoreit
    Linking Typed Feature Formalisms and Terminological Knowledge Representation Languages in Natural Language Front-Ends. [Citation Graph (0, 0)][DBLP]
    Wissensbasierte Systeme, 1991, pp:375-383 [Conf]
  32. Rolf Backofen, Sebastian Will, Erich Bornberg-Bauer
    Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:234-242 [Journal]
  33. Anke Busch, Rolf Backofen
    INFO-RNA - a fast approach to inverse RNA folding. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:15, pp:1823-1831 [Journal]
  34. Anke Busch, Sebastian Will, Rolf Backofen
    SECISDesign: a server to design SECIS-elements within the coding sequence. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:15, pp:3312-3313 [Journal]
  35. Rainer Pudimat, Ernst Günter Schukat-Talamazzini, Rolf Backofen
    A multiple-feature framework for modelling and predicting transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:14, pp:3082-3088 [Journal]
  36. Sven Siebert, Rolf Backofen
    MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:16, pp:3352-3359 [Journal]
  37. David Gilbert, Rolf Backofen, Roland H. C. Yap
    Introduction to the Special Issue on Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Constraints, 2001, v:6, n:2/3, pp:139- [Journal]
  38. Rolf Backofen
    The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound. [Citation Graph (0, 0)][DBLP]
    Constraints, 2001, v:6, n:2/3, pp:223-255 [Journal]
  39. Rolf Backofen, David Gilbert
    Bioinformatics and Constraints. [Citation Graph (0, 0)][DBLP]
    Constraints, 2001, v:6, n:2/3, pp:141-156 [Journal]
  40. Rolf Backofen, Sebastian Will
    Excluding Symmetries in Constraint-Based Search. [Citation Graph (0, 0)][DBLP]
    Constraints, 2002, v:7, n:3-4, pp:333-349 [Journal]
  41. Rolf Backofen, Sebastian Will
    A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models. [Citation Graph (0, 0)][DBLP]
    Constraints, 2006, v:11, n:1, pp:5-30 [Journal]
  42. Rolf Backofen
    Controlling Functional Uncertainty [Citation Graph (0, 0)][DBLP]
    CoRR, 1996, v:0, n:, pp:- [Journal]
  43. Günter Neumann, Rolf Backofen, Judith Baur, Markus Becker, Christian Braun
    An Information Extraction Core System for Real World German Text Processing [Citation Graph (0, 0)][DBLP]
    CoRR, 1997, v:0, n:, pp:- [Journal]
  44. Rolf Backofen, Ralf Treinen
    How to Win a Game with Features. [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 1998, v:142, n:1, pp:76-101 [Journal]
  45. Rolf Backofen, François Bry, Peter Clote, Hans-Peter Kriegel, Thomas Seidl, Klaus U. Schulz
    Bioinformatik - Aktuelles Schlagwort. [Citation Graph (0, 0)][DBLP]
    Informatik Spektrum, 1999, v:22, n:5, pp:376-378 [Journal]
  46. Rolf Backofen, N. S. Narayanaswamy, Firas Swidan
    Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:26- [Journal]
  47. Michael Hiller, Rolf Backofen, Stephan Heymann, Anke Busch, Timo Mika Gläßer, Johann Christoph Freytag
    Efficient prediction of alternative splice forms using protein domain homology. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:4, n:, pp:- [Journal]
  48. Rolf Backofen, Sebastian Will
    Local Sequence-structure Motifs in Rna. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2004, v:2, n:4, pp:681-698 [Journal]
  49. Rolf Backofen
    A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice (FCC). [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2004, v:2, n:2, pp:161-206 [Journal]
  50. Rolf Backofen, Sven Siebert
    Fast detection of common sequence structure patterns in RNAs. [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2007, v:5, n:2, pp:212-228 [Journal]
  51. Rolf Backofen
    A Complete Axiomatization of a Theory with Feature and Arity Constraints. [Citation Graph (0, 0)][DBLP]
    J. Log. Program., 1995, v:24, n:1&2, pp:37-71 [Journal]
  52. Rolf Backofen, James Rogers, K. Vijay-Shanker
    A First-Order Axiomatization of the Theory of Finite Trees. [Citation Graph (0, 0)][DBLP]
    Journal of Logic, Language and Information, 1995, v:4, n:1, pp:5-39 [Journal]
  53. Rolf Backofen
    Regular Path Expressions in Feature Logic. [Citation Graph (0, 0)][DBLP]
    J. Symb. Comput., 1994, v:17, n:5, pp:421-455 [Journal]
  54. Michael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, Matthias Platzer
    TassDB: a database of alternative tandem splice sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:188-192 [Journal]
  55. Rolf Backofen, Gert Smolka
    A Complete and Recursive Feature Theory. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1995, v:146, n:1&2, pp:243-268 [Journal]

  56. Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots. [Citation Graph (, )][DBLP]


  57. Fast RNA Structure Alignment for Crossing Input Structures. [Citation Graph (, )][DBLP]


  58. Sparse RNA Folding: Time and Space Efficient Algorithms. [Citation Graph (, )][DBLP]


  59. Structural Local Multiple Alignment of RNA. [Citation Graph (, )][DBLP]


  60. Lightweight Comparison of RNAs based on Exact Sequence-structure Matches. [Citation Graph (, )][DBLP]


  61. Simultaneous Alignment and Folding of Protein Sequences. [Citation Graph (, )][DBLP]


  62. Lifting Prediction to Alignment of RNA Pseudoknots. [Citation Graph (, )][DBLP]


  63. Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. [Citation Graph (, )][DBLP]


  64. Fast Prediction of RNA-RNA Interaction. [Citation Graph (, )][DBLP]


  65. biRNA: Fast RNA-RNA Binding Sites Prediction. [Citation Graph (, )][DBLP]


  66. Sparsification of RNA Structure Prediction Including Pseudoknots. [Citation Graph (, )][DBLP]


  67. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. [Citation Graph (, )][DBLP]


  68. A partition function algorithm for interacting nucleic acid strands. [Citation Graph (, )][DBLP]


  69. CPSP-web-tools: a server for 3D lattice protein studies. [Citation Graph (, )][DBLP]


  70. Lightweight comparison of RNAs based on exact sequence-structure matches. [Citation Graph (, )][DBLP]


  71. Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. [Citation Graph (, )][DBLP]


  72. Improved identification of conserved cassette exons using Bayesian networks. [Citation Graph (, )][DBLP]


  73. CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies. [Citation Graph (, )][DBLP]


  74. TassDB2 - A comprehensive database of subtle alternative splicing events. [Citation Graph (, )][DBLP]


  75. Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination. [Citation Graph (, )][DBLP]


  76. Decomposition Techniques for Subgraph Matching [Citation Graph (, )][DBLP]


  77. Equivalence Classes of Optimal Structures in HP Protein Models Including Side Chains [Citation Graph (, )][DBLP]


  78. Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains [Citation Graph (, )][DBLP]


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