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Graziano Pesole: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta
    SVM and RLS Models for Cancer Classification. [Citation Graph (0, 0)][DBLP]
    Computational Intelligence, 2005, pp:250-255 [Conf]
  2. Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
    Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. [Citation Graph (0, 0)][DBLP]
    ICTAI, 2003, pp:10-17 [Conf]
  3. Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
    An algorithm for finding signals of unknown length in DNA sequences. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:207-214 [Conf]
  4. Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi
    A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:63-77 [Conf]
  5. Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
    Methods for Pattern Discovery in Unaligned Biological Sequences. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2001, v:2, n:4, pp:417- [Journal]
  6. Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
    In silico representation and discovery of transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2004, v:5, n:3, pp:217-236 [Journal]
  7. Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni
    The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2000, v:1, n:3, pp:236-249 [Journal]
  8. Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
    GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:4, pp:497-499 [Journal]
  9. Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole
    DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3676-3679 [Journal]
  10. Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole
    CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:1, pp:1-8 [Journal]
  11. David S. Horner, Graziano Pesole
    The estimation of relative site variability among aligned homologous protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:5, pp:600-606 [Journal]
  12. Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante
    SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:6, pp:701-707 [Journal]
  13. Flavio Mignone, David S. Horner, Graziano Pesole
    WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:8, pp:1331-1333 [Journal]
  14. Graziano Pesole, Sabino Liuni, Mark D'Souza
    PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:5, pp:439-450 [Journal]
  15. N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole
    FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:5, pp:541-545 [Journal]
  16. Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
    ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:244- [Journal]
  17. Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone
    Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2002, v:26, n:5, pp:479-490 [Journal]
  18. Graziano Pesole, Giorgio Grillo, Sabino Liuni
    Databases of MRNA Untranslated Regions for Metazoa. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1996, v:20, n:1, pp:141-144 [Journal]
  19. Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
    A high performance grid-web service framework for the identification of 'conserved sequence tags'. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2007, v:23, n:3, pp:371-381 [Journal]
  20. Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
    An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. [Citation Graph (0, 0)][DBLP]
    J. Comput. Sci. Technol., 2004, v:19, n:1, pp:2-12 [Journal]
  21. Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone
    MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:172-173 [Journal]
  22. Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole
    CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:624-627 [Journal]
  23. Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole
    PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3608-3612 [Journal]
  24. Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole
    Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:199-203 [Journal]
  25. Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone
    MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:163-165 [Journal]
  26. Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
    UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:188-191 [Journal]
  27. Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
    UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:193-196 [Journal]
  28. Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone
    UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:335-340 [Journal]
  29. Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone
    UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:192-195 [Journal]
  30. Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole
    UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:141-146 [Journal]
  31. Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi
    DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:505-510 [Journal]
  32. Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole
    ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:440-443 [Journal]
  33. Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole
    MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:566-570 [Journal]

  34. GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. [Citation Graph (, )][DBLP]


  35. HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. [Citation Graph (, )][DBLP]


  36. New Tools for Expression Alternative Splicing Validation. [Citation Graph (, )][DBLP]


  37. Classification error as a measure of gene relevance in cancer diagnosis. [Citation Graph (, )][DBLP]


  38. Selection of relevant genes in cancer diagnosis based on their prediction accuracy. [Citation Graph (, )][DBLP]


  39. Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. [Citation Graph (, )][DBLP]


  40. Correlated substitution analysis and the prediction of amino acid structural contacts. [Citation Graph (, )][DBLP]


  41. Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. [Citation Graph (, )][DBLP]


  42. ASPicDB: A database resource for alternative splicing analysis. [Citation Graph (, )][DBLP]


  43. WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. [Citation Graph (, )][DBLP]


  44. p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. [Citation Graph (, )][DBLP]


  45. Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. [Citation Graph (, )][DBLP]


  46. Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics. [Citation Graph (, )][DBLP]


  47. Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. [Citation Graph (, )][DBLP]


  48. Regularized Least Squares Cancer Classifiers from DNA microarray data. [Citation Graph (, )][DBLP]


  49. EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. [Citation Graph (, )][DBLP]


  50. Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements. [Citation Graph (, )][DBLP]


  51. On the statistical assessment of classifiers using DNA microarray data. [Citation Graph (, )][DBLP]


  52. Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. [Citation Graph (, )][DBLP]


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