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Cathy H. Wu: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Hongfang Liu, Zhangzhi Hu, Cathy H. Wu
    Dynamically Generating a Protein Entity Dictionary Using Online Resources. [Citation Graph (0, 0)][DBLP]
    ACL, 2005, pp:- [Conf]
  2. Cathy H. Wu, George M. Whitson
    Artificial Neural System for Gene Classification Using a Domain Database. [Citation Graph (0, 0)][DBLP]
    ACM Conference on Computer Science, 1990, pp:288-292 [Conf]
  3. Cathy H. Wu, Tzx-Chung Chang
    Protein Classification Using a Neural Network Database System. [Citation Graph (0, 0)][DBLP]
    Conference on Analysis of Neural Network Applications, 1991, pp:29-41 [Conf]
  4. Cathy H. Wu, Michael W. Berry, Yuk-Shing Fung, Jerry McLarty
    Neural Networks for Molecular Sequence Classification. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:429-437 [Conf]
  5. Jason Tsong-Li Wang, Qicheng Ma, Dennis Shasha, Cathy H. Wu
    Application of neural networks to biological data mining: a case study in protein sequence classification. [Citation Graph (0, 0)][DBLP]
    KDD, 2000, pp:305-309 [Conf]
  6. Lynette Hirschman, Carol Friedman, Robin McEntire, C. Wu
    Linking Biomedical Language, Information and Knowledge - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:388-390 [Conf]
  7. Lynette Hirschman, Jong C. Park, Jun-ichi Tsujii, Cathy H. Wu, Limsoon Wong
    Literature Data Mining for Biology - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:323-325 [Conf]
  8. Cathy H. Wu, George M. Whitson, Chun-Tse Hsiao, Cheng-Fu Huang
    Classification Artificial Neural Systems for Genome Research. [Citation Graph (0, 0)][DBLP]
    SC, 1992, pp:797-803 [Conf]
  9. George M. Whitson, Cathy H. Wu, Pam Taylor
    Using an Artificial Neural System to Determine the Knowledge Base of an Expert System. [Citation Graph (0, 0)][DBLP]
    SIGSMALL/PC Symposium, 1990, pp:268-270 [Conf]
  10. Cathy H. Wu, Hsi-Lien Chen, Sheng-Chih Chen
    Counter-Propagation Neural Networks for Molecular Sequence Classification: Supervised LVQ and Dynamic Node Allocation. [Citation Graph (0, 0)][DBLP]
    Appl. Intell., 1997, v:7, n:1, pp:27-38 [Journal]
  11. Bo Han, Zoran Obradovic, Zhang-Zhi Hu, Cathy H. Wu, Slobodan Vucetic
    Substring selection for biomedical document classification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:17, pp:2136-2142 [Journal]
  12. Lynette Hirschman, Jong C. Park, Jun-ichi Tsujii, Limsoon Wong, Cathy H. Wu
    Accomplishments and challenges in literature data mining for biology. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:12, pp:1553-1561 [Journal]
  13. Zhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu
    Literature mining and database annotation of protein phosphorylation using a rule-based system. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:11, pp:2759-2765 [Journal]
  14. Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu
    BioThesaurus: a web-based thesaurus of protein and gene names. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:1, pp:103-105 [Journal]
  15. Peter B. McGarvey, Hongzhan Huang, Winona C. Barker, Bruce C. Orcutt, John S. Garavelli, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Chunlin Xiao, Cathy H. Wu
    PIR: a new resource for bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:3, pp:290-291 [Journal]
  16. Cathy H. Wu, Sailaja Shivakumar, Chittari V. Shivakumar, Sheng-Chih Chen
    GeneFIND web server for protein family identification and information retrieval. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:2, pp:223-224 [Journal]
  17. Cathy H. Wu, S. Zhao, H.-L. Chen, C. J. Lo, Jerry McLarty
    Motif identification neural design for rapid and sensitive protein family search. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:2, pp:109-118 [Journal]
  18. X. Yuan, Zhang-Zhi Hu, H. T. Wu, Manabu Torii, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu
    An online literature mining tool for protein phosphorylation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:13, pp:1668-1669 [Journal]
  19. Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu
    Dependence network modeling for biomarker identification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:198-206 [Journal]
  20. Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
    DynGO: a tool for visualizing and mining of Gene Ontology and its associations. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:201- [Journal]
  21. Raja Mazumder, Darren A. Natale, Sudhir Murthy, Rathi Thiagarajan, Cathy H. Wu
    Computational identification of strain-, species- and genus-specific proteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:279- [Journal]
  22. Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu
    iProLINK: an integrated protein resource for literature mining. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2004, v:28, n:5-6, pp:409-416 [Journal]
  23. Cathy H. Wu
    Classification Neural Networks for Rapid Sequence Annotation and Automated Database Organization. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1993, v:17, n:2, pp:219-227 [Journal]
  24. Cathy H. Wu
    Artificial Neural Networks for Molecular Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1997, v:21, n:4, pp:237-255 [Journal]
  25. Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhangzhi Hu, Winona C. Barker
    The iProClass integrated database for protein functional analysis. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2004, v:28, n:1, pp:87-96 [Journal]
  26. Cathy H. Wu, Hongzhan Huang, Lai-Su L. Yeh, Winona C. Barker
    Protein family classification and functional annotation. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2003, v:27, n:1, pp:37-47 [Journal]
  27. Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu
    The PIR integrated protein databases and data retrieval system. [Citation Graph (0, 0)][DBLP]
    Data Science Journal, 2004, v:3, n:, pp:163-174 [Journal]
  28. Jason Tsong-Li Wang, Qicheng Ma, Dennis Shasha, Cathy H. Wu
    New techniques for extracting features from protein sequences. [Citation Graph (0, 0)][DBLP]
    IBM Systems Journal, 2001, v:40, n:2, pp:426-441 [Journal]
  29. Cathy H. Wu, Hongzhan Huang, Jerry McLarty
    Gene Family Identification Network Design for Protein Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    International Journal on Artificial Intelligence Tools, 1999, v:8, n:4, pp:419-432 [Journal]
  30. Cathy H. Wu, S. Zhao, H.-L. Chen
    A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:4, pp:547-562 [Journal]
  31. Cathy H. Wu, Michael W. Berry, Sailaja Shivakumar
    Neural Networks for Full-Scale Protein Sequence Classification: Sequence Encoding with Singular Value Decomposition. [Citation Graph (0, 0)][DBLP]
    Machine Learning, 1995, v:21, n:1-2, pp:177-193 [Journal]
  32. Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
    UniProt: the Universal Protein knowledgebase. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:115-119 [Journal]
  33. Winona C. Barker, John S. Garavelli, Zhenglin Hou, Hongzhan Huang, Robert S. Ledley, Peter B. McGarvey, Hans-Werner Mewes, Bruce C. Orcutt, Friedhelm Pfeiffer, Akira Tsugita, C. R. Vinayaka, Chunlin Xiao, Lai-Su L. Yeh, Cathy H. Wu
    Protein Information Resource: a community resource for expert annotation of protein data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:29-32 [Journal]
  34. Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu
    The Protein Information Resource (PIR). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:41-44 [Journal]
  35. Winona C. Barker, John S. Garavelli, Peter B. McGarvey, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita, Cathy H. Wu
    The PIR-International Protein Sequence Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:39-43 [Journal]
  36. Hongzhan Huang, Winona C. Barker, Yongxing Chen, Cathy H. Wu
    iProClass: an integrated database of protein family, function and structure information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:390-392 [Journal]
  37. Hongzhan Huang, Chunlin Xiao, Cathy H. Wu
    ProClass protein family database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:273-276 [Journal]
  38. Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhangzhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker
    The Protein Information Resource: an integrated public resource of functional annotation of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:35-37 [Journal]
  39. Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhangzhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker
    PIRSF: family classification system at the Protein Information Resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:112-114 [Journal]
  40. Cathy H. Wu, Sailaja Shivakumar, Hongzhan Huang
    ProClass Protein Family Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:272-274 [Journal]
  41. Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, Winona C. Barker
    iProClass: an integrated, comprehensive and annotated protein classification database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:52-54 [Journal]
  42. Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhangzhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C. R. Vinayaka, Jian Zhang, Winona C. Barker
    The Protein Information Resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:345-347 [Journal]
  43. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
    InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal]
  44. Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, María J. Martín, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
    The Universal Protein Resource (UniProt). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:154-159 [Journal]
  45. Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
    The Universal Protein Resource (UniProt): an expanding universe of protein information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:187-191 [Journal]
  46. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
    New developments in the InterPro database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:224-228 [Journal]
  47. Katherine G. Herbert, Narain H. Gehani, William H. Piel, Jason Tsong-Li Wang, Cathy H. Wu
    BIO-AJAX: An Extensible Framework for Biological Data Cleaning. [Citation Graph (0, 0)][DBLP]
    SIGMOD Record, 2004, v:33, n:2, pp:51-57 [Journal]
  48. Qicheng Ma, Jason Tsong-Li Wang, Dennis Shasha, Cathy H. Wu
    DNA sequence classification via an expectation maximization algorithm and neural networks: a case study. [Citation Graph (0, 0)][DBLP]
    IEEE Transactions on Systems, Man, and Cybernetics, Part C, 2001, v:31, n:4, pp:468-475 [Journal]
  49. Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu
    UniRef: comprehensive and non-redundant UniProt reference clusters. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:10, pp:1282-1288 [Journal]

  50. Prediction of Catalytic Residues in Proteins Using a Consensus of Prediction (CoP) Approach. [Citation Graph (, )][DBLP]


  51. Functional Annotation of Protein Isoforms and Modified Forms. [Citation Graph (, )][DBLP]


  52. Mapping Gene/Protein Names in Free Text to Biomedical Databases. [Citation Graph (, )][DBLP]


  53. Document Classification for Mining Host Pathogen Protein-Protein Interactions. [Citation Graph (, )][DBLP]


  54. iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology. [Citation Graph (, )][DBLP]


  55. Document classification for mining host pathogen protein-protein interactions. [Citation Graph (, )][DBLP]


  56. Framework for a Protein Ontology. [Citation Graph (, )][DBLP]


  57. A comparison study on algorithms of detecting long forms for short forms in biomedical text. [Citation Graph (, )][DBLP]


  58. TGF-beta signaling proteins and the Protein Ontology. [Citation Graph (, )][DBLP]


  59. Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties. [Citation Graph (, )][DBLP]


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