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Joaquín Dopazo: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Álvaro Mateos, Javier Herrero, Joaquín Dopazo
    Using Perceptrons for Supervised Classification of DNA Microarray Samples: Obtaining the Optimal Level of Information and Finding Differentially Expressed Genes. [Citation Graph (0, 0)][DBLP]
    ICANN, 2002, pp:577-582 [Conf]
  2. Hernán Dopazo, Javier Santoyo, Joaquín Dopazo
    Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:116-121 [Conf]
  3. Joaquín Dopazo, Huaichun Wang, José María Carazo
    A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree. [Citation Graph (0, 0)][DBLP]
    IWANN, 1997, pp:932-941 [Conf]
  4. Leonardo Arbiza, Joaquín Dopazo, Hernán Dopazo
    Infering Non-Neutral Evolution within the Context of a Growing Genomic Framework: Preliminary Results using Human-Chimp Proteomes. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:92-99 [Conf]
  5. Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo
    Finding SNPs with Putative Phenotypic Effect at Transcriptional Level. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:157-160 [Conf]
  6. Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
    New Challenges in Gene Expression Data Analysis and the Extended GEPAS. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:1-5 [Conf]
  7. Álvaro Mateos, Joaquín Dopazo
    An Approach to the Modular Structure of Cancer. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:161-165 [Conf]
  8. Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo
    Highly Specific and Accurate Selection of siRNAs for High-Throughput Functional Assays. [Citation Graph (0, 0)][DBLP]
    Spanish Bioinformatics Conference, 2004, pp:132-136 [Conf]
  9. Michal Karzynski, Álvaro Mateos, Javier Herrero, Joaquín Dopazo
    Using a Genetic Algorithm and a Perceptron for Feature Selection and Supervised Class Learning in DNA Microarray Data. [Citation Graph (0, 0)][DBLP]
    Artif. Intell. Rev., 2003, v:20, n:1-2, pp:39-51 [Journal]
  10. Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo
    FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:4, pp:- [Journal]
  11. Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo
    Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:13, pp:2988-2993 [Journal]
  12. Joaquín Dopazo
    Reducing the effect of the data order in algorithms for constructing phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1988, v:4, n:2, pp:307- [Journal]
  13. Joaquín Dopazo
    A new index to find regions showing an unexpected variability or conservation in sequence alignments. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:3, pp:313-317 [Journal]
  14. Joaquín Dopazo, A. Rodriguez, J. C. Saiz, F. Sobrino
    Design of primers for PCR amplification of highly variable genomes. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:2, pp:123-125 [Journal]
  15. Joaquín Dopazo, A. Taberner, A. Moya
    Quantitative characterization of antigens using monoclonal antibody reactivities. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:1, pp:101-107 [Journal]
  16. Javier Herrero, Ramón Díaz-Uriarte, Joaquín Dopazo
    Gene expression data preprocessing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:5, pp:655-656 [Journal]
  17. Javier Herrero, Alfonso Valencia, Joaquín Dopazo
    A hierarchical unsupervised growing neural network for clustering gene expression patterns. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:126-136 [Journal]
  18. Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo
    Highly specific and accurate selection of siRNAs for high-throughput functional assays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1376-1382 [Journal]
  19. A. Taberner, P. Castanera, E. Silvestre, Joaquín Dopazo
    Estimation of the intrinsic rate of natural increase and its error by both algebraic and resampling approaches. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:5, pp:535-540 [Journal]
  20. Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo
    An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:3, pp:301-308 [Journal]
  21. Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo
    New phylogenetic venues opened by a novel implementation of the DNAml algorithm. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:6, pp:544-545 [Journal]
  22. Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte
    DNMAD: web-based diagnosis and normalization for microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3656-3658 [Journal]
  23. Huaichun Wang, Joaquín Dopazo, José María Carazo
    Self-organizing tree growing network for classifying amino acids. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:4, pp:376-377 [Journal]
  24. Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo
    Prophet, a web-based tool for class prediction using microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:3, pp:390-391 [Journal]
  25. Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo
    PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:242-248 [Journal]
  26. Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo
    GEPAS: a web-based resource for microarray gene expression data analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3461-3467 [Journal]
  27. Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
    New challenges in gene expression data analysis and the extended GEPAS. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:485-491 [Journal]
  28. Robert Hoffmann, Joaquín Dopazo, Juan C. Cigudosa, Alfonso Valencia
    HCAD, closing the gap between breakpoints and genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:511-513 [Journal]
  29. Lucía Conde, Juan M. Vaquerizas, Carles Ferrer-Costa, Xavier de la Cruz, Modesto Orozco, Joaquín Dopazo
    PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:501-505 [Journal]
  30. Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo
    BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:460-464 [Journal]
  31. Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo
    GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:616-620 [Journal]
  32. Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo
    BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:472-476 [Journal]
  33. David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo
    Next station in microarray data analysis: GEPAS. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:486-491 [Journal]
  34. Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo
    PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:621-625 [Journal]
  35. C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles
    Parallel Implementation of DNAml Program on Message-Passing Architectures. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 1998, v:24, n:5-6, pp:701-716 [Journal]

  36. Formulating and testing hypotheses in functional genomics. [Citation Graph (, )][DBLP]


  37. Functional profiling of microarray experiments using text-mining derived bioentities. [Citation Graph (, )][DBLP]


  38. Papers on normalization, variable selection, classification or clustering of microarray data. [Citation Graph (, )][DBLP]


  39. From genes to functional classes in the study of biological systems. [Citation Graph (, )][DBLP]


  40. The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. [Citation Graph (, )][DBLP]


  41. Functional assessment of time course microarray data. [Citation Graph (, )][DBLP]


  42. ETE: a python Environment for Tree Exploration. [Citation Graph (, )][DBLP]


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