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Peer Bork: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, Isabel Rojas
    Extracting Regulatory Gene Expression Networks From Pubmed. [Citation Graph (0, 0)][DBLP]
    ACL, 2004, pp:191-198 [Conf]
  2. Peer Bork
    Entschlüsselung von Proteinfunktionen mit Hilfe des Computers: Erkennung und Interpretation entfernter Sequenzähnlichkeiten. [Citation Graph (0, 0)][DBLP]
    Informatik in den Biowissenschaften, 1993, pp:67-78 [Conf]
  3. Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander
    The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. [Citation Graph (0, 0)][DBLP]
    ECAL, 1995, pp:843-851 [Conf]
  4. Peer Bork
    Comparative analysis of protein interaction networks. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:64-64 [Conf]
  5. Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber
    Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:31-32 [Conf]
  6. Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork
    Pathway alignment: Application in the comparative analysis of glycolysis. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  7. Jens Hanke, Peer Bork, Jens G. Reich
    Associative Data Base of Biomolecuiar Sequences. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:149- [Conf]
  8. Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
    Towards detection of sequence orthologs. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:25-30 [Conf]
  9. Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander
    GeneQuiz: A Workbench for Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:348-353 [Conf]
  10. Arvind K. Bansal, Peer Bork
    Applying Logic Programming to Derive Novel Functional Information of Genomes. [Citation Graph (0, 0)][DBLP]
    PADL, 1999, pp:275-289 [Conf]
  11. Peer Bork
    Comparing genes and genomes (abstract): from polymorphism to phylogeny. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:69-76 [Conf]
  12. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  13. N. P. Brown, Chris Sander, Peer Bork
    Frame: detection of genomic sequencing errors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:4, pp:367-371 [Journal]
  14. Francesca Ciccarelli, Peer Bork
    The WHy domain mediates the response to desiccation in plants and bacteria. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1304-1307 [Journal]
  15. Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
    The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:268-270 [Journal]
  16. Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Mathias Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber
    Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:271-278 [Journal]
  17. Frank Eisenhaber, Peer Bork
    Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:7, pp:528-535 [Journal]
  18. Jens Hanke, Gerrit Lehmann, Peer Bork, Jens G. Reich
    Associative database of protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:9, pp:741-748 [Journal]
  19. Hedvig Hegyi, J. M. Lai, Peer Bork
    The Sequence Alerting Server - a new WEB server. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:6, pp:619-620 [Journal]
  20. Sean D. Hooper, Peer Bork
    Medusa: a simple tool for interaction graph analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:24, pp:4432-4433 [Journal]
  21. Roland Krause, Christian von Mering, Peer Bork
    A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:15, pp:1901-1908 [Journal]
  22. Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas S. Jensen, Peer Bork, Søren Brunak
    Comparison of computational methods for the identification of cell cycle-regulated genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1164-1171 [Journal]
  23. Antonio Jesús Pérez, Carolina Perez-Iratxeta, Peer Bork, Guillermo Thode, Miguel A. Andrade
    Gene annotation from scientific literature using mappings between keyword systems. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:13, pp:2084-2091 [Journal]
  24. K. Rohde, Peer Bork
    A fast, sensitive pattern-matching approach for protein sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:2, pp:183-189 [Journal]
  25. Luis Sánchez-Pulido, Yan P. Yuan, Miguel A. Andrade, Peer Bork
    NAIL-Network Analysis Interface for Linking HMMER results. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:7, pp:656-657 [Journal]
  26. Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork
    Extraction of regulatory gene/protein networks from Medline. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:6, pp:645-650 [Journal]
  27. Parantu K. Shah, Peer Bork
    LSAT: learning about alternative transcripts in MEDLINE. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:7, pp:857-865 [Journal]
  28. Mikita Suyama, David Torrents, Peer Bork
    BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:12, pp:1968-1970 [Journal]
  29. Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
    Towards detection of orthologues in sequence databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:285-289 [Journal]
  30. Ivica Letunic, Peer Bork
    Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:1, pp:127-128 [Journal]
  31. Francesca D. Ciccarelli, Elisa Izaurralde, Peer Bork
    The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:64- [Journal]
  32. Parantu K. Shah, Carolina Perez-Iratxeta, Peer Bork, Miguel A. Andrade
    Information extraction from full text scientific articles: Where are the keywords? [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:20- [Journal]
  33. Raimund Tenhaken, Tobias Doerks, Peer Bork
    DCD - a novel plant specific domain in proteins involved in development and programmed cell death. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:169- [Journal]
  34. Steffen Schmidt, Peer Bork, Thomas Dandekar
    A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Computer Sciences, 2002, v:42, n:2, pp:405-407 [Journal]
  35. Anthony J. Brookes, Heikki Lehväslaiho, Marianne Siegfried, Jana G. Boehm, Yan P. Yuan, Chandra M. Sarkar, Peer Bork, J. Flavio R. Ortigao
    HGBASE: a database of SNPs and other variations in and around human genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:356-360 [Journal]
  36. D. Fredman, Marianne Siegfried, Yan P. Yuan, Peer Bork, Heikki Lehväslaiho, Anthony J. Brookes
    HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:387-391 [Journal]
  37. Lars Juhl Jensen, Julien Lagarde, Christian von Mering, Peer Bork
    ArrayProspector: a web resource of functional associations inferred from microarray expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:445-448 [Journal]
  38. Ivica Letunic, Richard R. Copley, Steffen Schmidt, Francesca Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork
    SMART 4.0: towards genomic data integration. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:142-144 [Journal]
  39. Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, Tobias Doerks, Jörg Schultz, Richard Mott, Francesca Ciccarelli, Richard R. Copley, Chris P. Ponting, Peer Bork
    Recent improvements to the SMART domain-based sequence annotation resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:242-244 [Journal]
  40. Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel
    STRING: a database of predicted functional associations between proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:258-261 [Journal]
  41. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
    The InterPro Database, 2003 brings increased coverage and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:315-318 [Journal]
  42. Carolina Perez-Iratxeta, Antonio Jesús Pérez, Peer Bork, Miguel A. Andrade
    Update on XplorMed: a web server for exploring scientific literature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3866-3868 [Journal]
  43. Chris P. Ponting, Jörg Schultz, Frank Milpetz, Peer Bork
    SMART: identification and annotation of domains from signalling and extracellular protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:229-232 [Journal]
  44. Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson
    ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3625-3630 [Journal]
  45. Jörg Schultz, Richard R. Copley, Tobias Doerks, Chris P. Ponting, Peer Bork
    SMART: a web-based tool for the study of genetically mobile domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:231-234 [Journal]
  46. Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork
    STRING: known and predicted protein-protein associations, integrated and transferred across organisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:433-437 [Journal]
  47. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
    InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal]
  48. Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    SMART 5: domains in the context of genomes and networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:257-260 [Journal]
  49. Mikita Suyama, David Torrents, Peer Bork
    PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:609-612 [Journal]
  50. Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork
    STRING 7 - recent developments in the integration and prediction of protein interactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:358-362 [Journal]
  51. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
    New developments in the InterPro database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:224-228 [Journal]

  52. Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. [Citation Graph (, )][DBLP]


  53. Sircah: a tool for the detection and visualization of alternative transcripts. [Citation Graph (, )][DBLP]


  54. AQUA: automated quality improvement for multiple sequence alignments. [Citation Graph (, )][DBLP]


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