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Bernard M. E. Moret: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Bernard M. E. Moret
    Decision Trees and Diagrams. [Citation Graph (2, 0)][DBLP]
    ACM Comput. Surv., 1982, v:14, n:4, pp:593-623 [Journal]
  2. Ali A. Kooshesh, Bernard M. E. Moret
    Folding a Simple Polygon: A Paradigm for Computational Geometry. [Citation Graph (0, 0)][DBLP]
    ACM Conference on Computer Science, 1995, pp:114-118 [Conf]
  3. Bernard M. E. Moret
    Computational Challenges from the Tree of Life. [Citation Graph (0, 0)][DBLP]
    ALENEX/ANALCO, 2005, pp:3-16 [Conf]
  4. Krister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret
    Approximating the True Evolutionary Distance between Two Genomes. [Citation Graph (0, 0)][DBLP]
    ALENEX/ANALCO, 2005, pp:121-129 [Conf]
  5. Tiffani L. Williams, Bernard M. E. Moret
    An Investigation of Phylogenetic Likelihood Methods. [Citation Graph (0, 0)][DBLP]
    BIBE, 2003, pp:79-86 [Conf]
  6. Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis
    Phylogenetic Reconstruction from Arbitrary Gene-Order Data. [Citation Graph (0, 0)][DBLP]
    BIBE, 2004, pp:592-599 [Conf]
  7. Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang
    Inferring Ancestral Chloroplast Genomes with Inverted Repea. [Citation Graph (0, 0)][DBLP]
    BIOCOMP, 2006, pp:75-81 [Conf]
  8. Bernard M. E. Moret, Henry D. Shapiro
    How to Find a Minimum Spanning Tree in Practice. [Citation Graph (0, 0)][DBLP]
    New Results and New Trends in Computer Science, 1991, pp:192-203 [Conf]
  9. Tao Liu, Jijun Tang, Bernard M. E. Moret
    Quartet-Based Phylogeny Reconstruction from Gene Orders. [Citation Graph (0, 0)][DBLP]
    COCOON, 2005, pp:63-73 [Conf]
  10. Mark Marron, Krister M. Swenson, Bernard M. E. Moret
    Genomic Distances under Deletions and Insertions. [Citation Graph (0, 0)][DBLP]
    COCOON, 2003, pp:537-547 [Conf]
  11. Srinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret
    Point set labeling with specified positions. [Citation Graph (0, 0)][DBLP]
    Symposium on Computational Geometry, 2000, pp:182-190 [Conf]
  12. Jijun Tang, Bernard M. E. Moret
    Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. [Citation Graph (0, 0)][DBLP]
    CPM, 2005, pp:406-416 [Conf]
  13. Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams
    Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:98-109 [Conf]
  14. Nicholas D. Pattengale, Bernard M. E. Moret
    Phylogenetic Postprocessing. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:57-58 [Conf]
  15. David A. Bader, Bernard M. E. Moret, Peter Sanders
    Algorithm Engineering for Parallel Computation. [Citation Graph (0, 0)][DBLP]
    Experimental Algorithmics, 2000, pp:1-23 [Conf]
  16. Bernard M. E. Moret, Tandy Warnow
    Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics. [Citation Graph (0, 0)][DBLP]
    Experimental Algorithmics, 2000, pp:163-180 [Conf]
  17. Bernard M. E. Moret, David A. Bader, Tandy Warnow
    High-Performance Algorithm Engineering for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2001, pp:1012-1021 [Conf]
  18. Ali A. Kooshesh, Bernard M. E. Moret
    Folding a Triangulated Simple Polygon: Structural and Algorithmic Results. [Citation Graph (0, 0)][DBLP]
    ICCI, 1991, pp:102-110 [Conf]
  19. Paul Helman, Bernard M. E. Moret, Henry D. Shapiro
    An Exact Characterization of Greedy Structures. [Citation Graph (0, 0)][DBLP]
    IPCO, 1992, pp:287-297 [Conf]
  20. Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman
    A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:104-115 [Conf]
  21. Bernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman
    New approaches for reconstructing phylogenies from gene order data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:165-173 [Conf]
  22. Jijun Tang, Bernard M. E. Moret
    Scaling up accurate phylogenetic reconstruction from gene-order data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:305-312 [Conf]
  23. Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan
    A New Implmentation and Detailed Study of Breakpoint Analysis. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:583-594 [Conf]
  24. Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    The Accuracy of Fast Phylogenetic Methods for Large Datasets. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:211-222 [Conf]
  25. Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse
    Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:315-326 [Conf]
  26. Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow
    Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:524-535 [Conf]
  27. Nicholas D. Pattengale, Bernard M. E. Moret
    A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:221-230 [Conf]
  28. Krister M. Swenson, Nicholas D. Pattengale, Bernard M. E. Moret
    A Framework for Orthology Assignment from Gene Rearrangement Data. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2005, pp:153-166 [Conf]
  29. Srinivas Doddi, Madhav V. Marathe, Andy Mirzaian, Bernard M. E. Moret, Binhai Zhu
    Map Labeling and Its Generalizations. [Citation Graph (0, 0)][DBLP]
    SODA, 1997, pp:148-157 [Conf]
  30. Andrew V. Goldberg, Bernard M. E. Moret
    Combinatorial Algorithms Test Sets [CATS]: The ACM/EATCS Platform for Experimental Research. [Citation Graph (0, 0)][DBLP]
    SODA, 1999, pp:913-914 [Conf]
  31. Gregory L. Heileman, Chaouki T. Abdallah, Bernard M. E. Moret, Bradley J. Smith
    Dynamical System Representation of Open Address Hash Functions. [Citation Graph (0, 0)][DBLP]
    SODA, 1999, pp:919-920 [Conf]
  32. Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter
    Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. [Citation Graph (0, 0)][DBLP]
    SODA, 2001, pp:196-205 [Conf]
  33. Tandy Warnow, Bernard M. E. Moret, Katherine St. John
    Absolute convergence: true trees from short sequences. [Citation Graph (0, 0)][DBLP]
    SODA, 2001, pp:186-195 [Conf]
  34. Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret
    Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:1-13 [Conf]
  35. Bernard M. E. Moret, Usman Roshan, Tandy Warnow
    Sequence-Length Requirements for Phylogenetic Methods. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:343-356 [Conf]
  36. Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu
    Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:521-536 [Conf]
  37. Adam C. Siepel, Bernard M. E. Moret
    Finding an Optimal Inversion Median: Experimental Results. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:189-203 [Conf]
  38. David A. Bader, Bernard M. E. Moret, Mi Yan
    A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. [Citation Graph (0, 0)][DBLP]
    WADS, 2001, pp:365-376 [Conf]
  39. Bernard M. E. Moret, Henry D. Shapiro
    An Emperical Analysis of Algorithms for Constructing a Minimum Spanning Tree. [Citation Graph (0, 0)][DBLP]
    WADS, 1991, pp:400-411 [Conf]
  40. Jijun Tang, Bernard M. E. Moret
    Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. [Citation Graph (0, 0)][DBLP]
    WADS, 2003, pp:37-46 [Conf]
  41. David A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein
    Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. [Citation Graph (0, 0)][DBLP]
    Algorithm Engineering, 2001, pp:129-144 [Conf]
  42. Zhiqiang Chen, Andrew T. Holle, Bernard M. E. Moret, Jared Saia, Ali Boroujerdi
    Network Routing Models Applied to Aircraft Routing Problems. [Citation Graph (0, 0)][DBLP]
    Winter Simulation Conference, 1995, pp:1200-1206 [Conf]
  43. M. M. Morin, B. M. E. Moret
    NetGen: generating phylogenetic networks with diploid hybrids. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:15, pp:1921-1923 [Journal]
  44. Michael J. Mathey, Bernard M. E. Moret
    The Computational Metaphor and Quantum Physics. [Citation Graph (0, 0)][DBLP]
    Commun. ACM, 1983, v:26, n:2, pp:137-145 [Journal]
  45. Bernard M. E. Moret, Li-San Wang, Tandy Warnow
    Toward New Software for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    IEEE Computer, 2002, v:35, n:7, pp:55-64 [Journal]
  46. Srinivas Doddi, Madhav V. Marathe, Bernard M. E. Moret
    Point Set Labeling with Specified Positions. [Citation Graph (0, 0)][DBLP]
    Int. J. Comput. Geometry Appl., 2002, v:12, n:1-2, pp:29-66 [Journal]
  47. Michael J. Collins, Bernard M. E. Moret
    Improved Lower Bounds for the Link Length of Rectilinear Spanning Paths in Grids. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1998, v:68, n:6, pp:317-319 [Journal]
  48. Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter
    Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 2003, v:48, n:1, pp:173-193 [Journal]
  49. Bernard M. E. Moret
    Foreword. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 2001, v:38, n:1, pp:1- [Journal]
  50. David A. Bader, Bernard M. E. Moret, Mi Yan
    A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:5, pp:483-491 [Journal]
  51. Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow
    Steps toward accurate reconstructions of phylogenies from gene-order data. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2002, v:65, n:3, pp:508-525 [Journal]
  52. Bernard M. E. Moret, Henry D. Shapiro
    Algorithms and Experiments: The New (and Old) Methodology. [Citation Graph (0, 0)][DBLP]
    J. UCS, 2001, v:7, n:5, pp:434-446 [Journal]
  53. Ali A. Kooshesh, Bernard M. E. Moret
    Three-coloring the vertices of a triangulated simple polygon. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 1992, v:25, n:4, pp:443-0 [Journal]
  54. Chea-Tin (Tim) Tseng, Bernard M. E. Moret
    A new method for one-dimensional linear feature transformations. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 1990, v:23, n:7, pp:745-752 [Journal]
  55. Paul Helman, Bernard M. E. Moret, Henry D. Shapiro
    An Exact Characterization of Greedy Structures. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1993, v:6, n:2, pp:274-283 [Journal]
  56. Bernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez
    Symmetric and Threshold Boolean Functions Are Exhaustive. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Computers, 1983, v:32, n:12, pp:1211-1212 [Journal]
  57. Bernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme
    Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:1, pp:13-23 [Journal]
  58. Mark Marron, Krister M. Swenson, Bernard M. E. Moret
    Genomic Distances under Deletions and Insertions. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2004, v:325, n:3, pp:347-360 [Journal]
  59. Bernard M. E. Moret, David A. Bader, Tandy Warnow
    High-Performance Algorithm Engineering for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    The Journal of Supercomputing, 2002, v:22, n:1, pp:99-111 [Journal]
  60. Bernard M. E. Moret, Michael G. Thomason, Rafael C. Gonzalez
    The Activity of a Variable and Its Relation to Decision Trees. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Program. Lang. Syst., 1980, v:2, n:4, pp:580-595 [Journal]

  61. Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. [Citation Graph (, )][DBLP]


  62. An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations. [Citation Graph (, )][DBLP]


  63. Estimating true evolutionary distances under the DCJ model. [Citation Graph (, )][DBLP]


  64. Session Introduction. [Citation Graph (, )][DBLP]


  65. Hurdles Hardly Have to Be Heeded. [Citation Graph (, )][DBLP]


  66. Sorting Signed Permutations by Inversions in O(nlogn) Time. [Citation Graph (, )][DBLP]


  67. How Many Bootstrap Replicates Are Necessary?. [Citation Graph (, )][DBLP]


  68. Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach. [Citation Graph (, )][DBLP]


  69. Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models. [Citation Graph (, )][DBLP]


  70. Uncovering Hidden Phylogenetic Consensus. [Citation Graph (, )][DBLP]


  71. Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks. [Citation Graph (, )][DBLP]


  72. Inversion-based genomic signatures. [Citation Graph (, )][DBLP]


  73. Maximum independent sets of commuting and noninterfering inversions. [Citation Graph (, )][DBLP]


  74. Heuristics for the inversion median problem. [Citation Graph (, )][DBLP]


  75. Estimating true evolutionary distances under rearrangements, duplications, and losses. [Citation Graph (, )][DBLP]


  76. Constructive complexity. [Citation Graph (, )][DBLP]


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