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Jesús A. Izaguirre: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Rajiv Chaturvedi, Chengbang Huang, Jesús A. Izaguirre, Stuart A. Newman, James A. Glazier, Mark S. Alber
    A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb. [Citation Graph (0, 0)][DBLP]
    ACRI, 2004, pp:543-552 [Conf]
  2. Justin M. Wozniak, Aaron Striegel, David Salyers, Jesús A. Izaguirre
    GIPSE: Streamlining the Management of Simulation on the Grid. [Citation Graph (0, 0)][DBLP]
    Annual Simulation Symposium, 2005, pp:130-137 [Conf]
  3. Trevor M. Cickovski, Chris Sweet, Jesús A. Izaguirre
    MDL, A Domain-Specific Language for Molecular Dynamics. [Citation Graph (0, 0)][DBLP]
    Annual Simulation Symposium, 2007, pp:256-266 [Conf]
  4. Rajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor M. Cickovski, P. Virtue, G. Thomas, G. Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier
    Multi-model Simulations of Chicken Limb Morphogenesis. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science, 2003, pp:39-49 [Conf]
  5. Scott S. Hampton, Jesús A. Izaguirre
    Improved Sampling for Biological Molecules Using Shadow Hybrid Monte Carlo. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science, 2004, pp:268-275 [Conf]
  6. Thierry Matthey, Alice Ko, Jesús A. Izaguirre
    PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science, 2003, pp:50-59 [Conf]
  7. Shannon K. Kuntz, Richard C. Murphy, Michael T. Niemier, Jesús A. Izaguirre, Peter M. Kogge
    Petaflop Computing for Protein Folding. [Citation Graph (0, 0)][DBLP]
    PPSC, 2001, pp:- [Conf]
  8. Thierry Matthey, Jesús A. Izaguirre
    ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization. [Citation Graph (0, 0)][DBLP]
    PPSC, 2001, pp:- [Conf]
  9. Qun Ma, Jesús A. Izaguirre
    Long Time Step Molecular Dynamics using Targeted Langevin Stabilization. [Citation Graph (0, 0)][DBLP]
    SAC, 2003, pp:178-182 [Conf]
  10. Qun Ma, Jesús A. Izaguirre, Robert D. Skeel
    Nonlinear Instability in Multiple Time Stepping Molecular Dynamics. [Citation Graph (0, 0)][DBLP]
    SAC, 2003, pp:167-171 [Conf]
  11. Douglas Thain, Sander Klous, Justin M. Wozniak, Paul Brenner, Aaron Striegel, Jesús A. Izaguirre
    Separating Abstractions from Resources in a Tactical Storage System. [Citation Graph (0, 0)][DBLP]
    SC, 2005, pp:55- [Conf]
  12. Jesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor M. Cickovski, J. Coffland, G. Thomas, G. Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier
    COMPUCELL, a multi-model framework for simulation of morphogenesis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:7, pp:1129-1137 [Journal]
  13. Michael S. Crocker, Scott S. Hampton, Thierry Matthey, Jesús A. Izaguirre
    MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2005, v:26, n:10, pp:1021-1031 [Journal]
  14. Jesús A. Izaguirre, Scott S. Hampton, Thierry Matthey
    Parallel multigrid summation for the N-body problem. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2005, v:65, n:8, pp:949-962 [Journal]
  15. Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre
    A Framework for Three-Dimensional Simulation of Morphogenesis. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:4, pp:273-288 [Journal]
  16. Thierry Matthey, Trevor M. Cickovski, Scott S. Hampton, Alice Ko, Qun Ma, Matthew Nyerges, Troy Raeder, Thomas Slabach, Jesús A. Izaguirre
    ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Math. Softw., 2004, v:30, n:3, pp:237-265 [Journal]
  17. Paul Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, J. W. Peng, Jesús A. Izaguirre
    Biomolecular Path Sampling Enabled by Processing in Network Storage. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2007, pp:1-6 [Conf]
  18. Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre
    Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:1, pp:78-87 [Journal]

  19. Determination of Specificity Residues in Two Component Systems using Graphlets. [Citation Graph (, )][DBLP]


  20. Generosity and gluttony in GEMS: grid enabled molecular simulations. [Citation Graph (, )][DBLP]


  21. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. [Citation Graph (, )][DBLP]


  22. Addendum. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference. [Citation Graph (, )][DBLP]


  23. From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. [Citation Graph (, )][DBLP]


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