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Ting Chen: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Ping Guo, Yang Zhou, Jun Zhuang, Ting Chen, Yan-Rong Kang
    An Efficient Algorithm for Mining Both Closed and Maximal Frequent Free Subtrees Using Canonical Forms. [Citation Graph (0, 0)][DBLP]
    ADMA, 2005, pp:96-107 [Conf]
  2. Jiaheng Lu, Ting Chen, Tok Wang Ling
    Efficient processing of XML twig patterns with parent child edges: a look-ahead approach. [Citation Graph (0, 0)][DBLP]
    CIKM, 2004, pp:533-542 [Conf]
  3. Ting Chen, Steven Skiena
    Trie-Based Data Structures for Sequence Assembly. [Citation Graph (0, 0)][DBLP]
    CPM, 1997, pp:206-223 [Conf]
  4. Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun
    Prediction of Protein Function Using Protein-Protein Interaction Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2002, pp:197-206 [Conf]
  5. Xiaolei Huang, Dimitris N. Metaxas, Ting Chen
    MetaMorphs: Deformable Shape and Texture Models. [Citation Graph (0, 0)][DBLP]
    CVPR (1), 2004, pp:496-503 [Conf]
  6. Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen
    Efficient detection and exploitation of infeasible paths for software timing analysis. [Citation Graph (0, 0)][DBLP]
    DAC, 2006, pp:358-363 [Conf]
  7. Daofeng Luo, Ting Chen, Tok Wang Ling, Xiaofeng Meng
    On View Transformation Support for a Native XML DBMS. [Citation Graph (0, 0)][DBLP]
    DASFAA, 2004, pp:226-231 [Conf]
  8. Ting Chen, Tok Wang Ling, Chee Yong Chan
    Prefix Path Streaming: A New Clustering Method for Optimal Holistic XML Twig Pattern Matching. [Citation Graph (0, 0)][DBLP]
    DEXA, 2004, pp:801-810 [Conf]
  9. Bingwen Lu, Ting Chen
    A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:113-121 [Conf]
  10. Ting Chen, Ming-Yang Kao
    On the Informational Asymmetry between Upper and Lower Bounds for Ultrametric Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    ESA, 1999, pp:248-256 [Conf]
  11. Leon Axel, Ting Chen, Tushar Manglik
    Dense Myocardium Deformation Estimation for 2D Tagged MRI. [Citation Graph (0, 0)][DBLP]
    FIMH, 2005, pp:446-456 [Conf]
  12. Ting Chen, Dimitris N. Metaxas
    Integration of Gibbs Prior Models and Deformable Models for 3D Medical Image Segmentation. [Citation Graph (0, 0)][DBLP]
    ICPR (1), 2002, pp:719-722 [Conf]
  13. Ting Chen
    Artificial Neural Networks for Motion Analysis. [Citation Graph (0, 0)][DBLP]
    ICTAI, 1994, pp:175-180 [Conf]
  14. Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, Fengzhu Sun
    An integrative approach for causal gene identification and gene regulatory pathway inference. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:489-496 [Conf]
  15. Ting Chen, Dimitris N. Metaxas, Leon Axel
    3D Cardiac Anatomy Reconstruction Using High Resolution CT Data. [Citation Graph (0, 0)][DBLP]
    MICCAI (1), 2004, pp:411-418 [Conf]
  16. Ting Chen, Dimitris N. Metaxas
    Image Segmentation Based on the Integration of Markov Random Fields and Deformable Models. [Citation Graph (0, 0)][DBLP]
    MICCAI, 2000, pp:256-265 [Conf]
  17. Ting Chen, Dimitris N. Metaxas
    Gibbs Prior Models, Marching Cubes, and Deformable Models: A Hybrid Framework for 3D Medical Image Segmentation. [Citation Graph (0, 0)][DBLP]
    MICCAI (2), 2003, pp:703-710 [Conf]
  18. Celina Imielinska, Dimitris N. Metaxas, Jayaram K. Udupa, Yinpeng Jin, Ting Chen
    Hybrid Segmentation of Anatomical Data. [Citation Graph (0, 0)][DBLP]
    MICCAI, 2001, pp:1048-1057 [Conf]
  19. Tushar Manglik, Alexandru Cernicanu, Vinay S. Pai, Daniel Kim, Ting Chen, Pradnya Dugal, Bharathi Batchu, Leon Axel
    Gabor Filter-Based Automated Strain Computation from Tagged MR Images. [Citation Graph (0, 0)][DBLP]
    MICCAI (2), 2004, pp:1064-1065 [Conf]
  20. Abbas El Gamal, Ting Chen
    A Graduate Level Course on Image Sensors and Digital Cameras. [Citation Graph (0, 0)][DBLP]
    MSE, 2001, pp:102-0 [Conf]
  21. Ethan L. Miller, Dan Shen, Junli Liu, Charles K. Nicholas, Ting Chen
    Techniques for Gigabyte-Scale N-gram Based Information Retrieval on Personal Computers. [Citation Graph (0, 0)][DBLP]
    PDPTA, 1999, pp:1410-1416 [Conf]
  22. Ting Chen, Hongyu L. He, George M. Church
    Modeling Gene Expression with Differential Equations. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:29-40 [Conf]
  23. Minghua Deng, Fengzhu Sun, Ting Chen
    Assessment of the reliability of protein-protein interactions and protein function prediction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:140-151 [Conf]
  24. Ting Chen
    Gene-finding via tandem mass spectrometry. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:87-94 [Conf]
  25. Ting Chen, Vladimir Filkov, Steven Skiena
    Identifying gene regulatory networks from experimental data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:94-103 [Conf]
  26. Ting Chen, Jacob D. Jaffe, George M. Church
    Algorithms for identifying protein cross-links via tandem mass spectrometry. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:95-102 [Conf]
  27. Minghua Deng, Ting Chen, Fengzhu Sun
    An integrated probabilistic model for functional prediction of proteins. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:95-103 [Conf]
  28. Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen
    Inferring domain-domain interactions from protein-protein interactions. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:117-126 [Conf]
  29. Yunhu Wan, Ting Chen
    A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:342-356 [Conf]
  30. Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun
    Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. [Citation Graph (0, 0)][DBLP]
    Computational Methods for SNPs and Haplotype Inference, 2002, pp:96-112 [Conf]
  31. Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen
    Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:332-340 [Conf]
  32. Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen
    WCET Centric Data Allocation to Scratchpad Memory. [Citation Graph (0, 0)][DBLP]
    RTSS, 2005, pp:223-232 [Conf]
  33. Yao-Ting Huang, Kun-Mao Chao, Ting Chen
    An approximation algorithm for haplotype inference by maximum parsimony. [Citation Graph (0, 0)][DBLP]
    SAC, 2005, pp:146-150 [Conf]
  34. Ting Chen, Jiaheng Lu, Tok Wang Ling
    On Boosting Holism in XML Twig Pattern Matching using Structural Indexing Techniques. [Citation Graph (0, 0)][DBLP]
    SIGMOD Conference, 2005, pp:455-466 [Conf]
  35. Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
    A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry. [Citation Graph (0, 0)][DBLP]
    SODA, 2000, pp:389-398 [Conf]
  36. Jiaheng Lu, Tok Wang Ling, Chee Yong Chan, Ting Chen
    From Region Encoding To Extended Dewey: On Efficient Processing of XML Twig Pattern Matching. [Citation Graph (0, 0)][DBLP]
    VLDB, 2005, pp:193-204 [Conf]
  37. Biman Chakraborty, Ting Chen, Tulika Mitra, Abhik Roychoudhury
    Handling Constraints in Multi-Objective GA for Embedded System Design. [Citation Graph (0, 0)][DBLP]
    VLSI Design, 2006, pp:305-310 [Conf]
  38. Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao
    Approximation Algorithms for the Selection of Robust Tag SNPs. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:278-289 [Conf]
  39. Yuan Fa, Ya Bing Chen, Tok Wang Ling, Ting Chen
    Materialized View Maintenance for XML Documents. [Citation Graph (0, 0)][DBLP]
    WISE, 2004, pp:365-371 [Conf]
  40. Jiaheng Lu, Ting Chen, Tok Wang Ling
    TJFast: effective processing of XML twig pattern matching. [Citation Graph (0, 0)][DBLP]
    WWW (Special interest tracks and posters), 2005, pp:1118-1119 [Conf]
  41. Ting Chen, Steven Skiena
    A case study in genome-level fragment assembly. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:6, pp:494-500 [Journal]
  42. Minghua Deng, Zhidong Tu, Fengzhu Sun, Ting Chen
    Mapping gene ontology to proteins based on protein-protein interaction data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:6, pp:895-902 [Journal]
  43. Shih-Chieh Su, C. C. Jay Kuo, Ting Chen
    Inference of missing SNPs and information quantity measurements for haplotype blocks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2001-2007 [Journal]
  44. Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun
    HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:1, pp:131-134 [Journal]
  45. Debojyoti Dutta, Ting Chen
    Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:5, pp:612-618 [Journal]
  46. Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao
    Selecting additional tag SNPs for tolerating missing data in genotyping. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:263- [Journal]
  47. Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
    A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry [Citation Graph (0, 0)][DBLP]
    CoRR, 2001, v:0, n:, pp:- [Journal]
  48. Ting Chen, Steven Skiena
    Sorting with Fixed-length Reversals. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:269-295 [Journal]
  49. Ting Chen, Frank K. Hwang
    A competitive algorithm in searching for many edges in a hypergraph. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:4, pp:566-571 [Journal]
  50. Ting Chen, Jacob D. Jaffe, George M. Church
    Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:6, pp:571-583 [Journal]
  51. Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
    A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:3, pp:325-337 [Journal]
  52. Bingwen Lu, Ting Chen
    A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:1, pp:1-12 [Journal]
  53. Minghua Deng, Ting Chen, Fengzhu Sun
    An Integrated Probabilistic Model for Functional Prediction of Proteins. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:463-475 [Journal]
  54. Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun
    Prediction of Protein Function Using Protein-Protein Interaction Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:6, pp:947-960 [Journal]
  55. Debojyoti Dutta, Rajarshi Guha, Peter C. Jurs, Ting Chen
    Scalable Partitioning and Exploration of Chemical Spaces Using Geometric Hashing. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:1, pp:321-333 [Journal]
  56. Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen
    R-NN Curves: An Intuitive Approach to Outlier Detection Using a Distance Based Method. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:4, pp:1713-1722 [Journal]
  57. Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen
    Local Lazy Regression: Making Use of the Neighborhood to Improve QSAR Predictions. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:4, pp:1836-1847 [Journal]
  58. Yong He, Ting Chen
    A New Approximation Algorithm for Sorting of Signed Permutations. [Citation Graph (0, 0)][DBLP]
    J. Comput. Sci. Technol., 2003, v:18, n:1, pp:125-130 [Journal]
  59. Ting Chen, Vladimir Filkov, Steven Skiena
    Identifying gene regulatory networks from experimental data. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 2001, v:27, n:1-2, pp:141-162 [Journal]
  60. Ting Chen, Q. H. Wu, Reza Rahmani-Torkaman, Jim Hughes
    A pseudo top-hat mathematical morphological approach to edge detection in dark regions. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2002, v:35, n:1, pp:199-210 [Journal]
  61. Ting Chen, Sohae Chung, Leon Axel
    Automated Tag Tracking Using Gabor Filter Bank, Robust Point Matching, and Deformable Models. [Citation Graph (0, 0)][DBLP]
    FIMH, 2007, pp:22-31 [Conf]
  62. Xiaoxu Wang, Joel Schaerer, Suejung B. Huh, Zhen Qian, Dimitris N. Metaxas, Ting Chen, Leon Axel
    Reconstruction of Detailed Left Ventricle Motion from tMRI Using Deformable Models. [Citation Graph (0, 0)][DBLP]
    FIMH, 2007, pp:60-69 [Conf]
  63. Piramanayagam Arumuga Nainar, Ting Chen, Jake Rosin, Ben Liblit
    Statistical debugging using compound boolean predicates. [Citation Graph (0, 0)][DBLP]
    ISSTA, 2007, pp:5-15 [Conf]
  64. Ting Chen, Sohae Chung, Leon Axel
    2D Motion Analysis of Long Axis Cardiac Tagged MRI. [Citation Graph (0, 0)][DBLP]
    MICCAI (2), 2007, pp:469-476 [Conf]
  65. Eric Chu, Akanksha Baid, Ting Chen, AnHai Doan, Jeffrey F. Naughton
    A Relational Approach to Incrementally Extracting and Querying Structure in Unstructured Data. [Citation Graph (0, 0)][DBLP]
    VLDB, 2007, pp:1045-1056 [Conf]

  66. Cesar-FD: An Effective Stateful Fault Detection Mechanism in Drug Discovery Grid. [Citation Graph (, )][DBLP]


  67. The Case for a Structured Approach to Managing Unstructured Data. [Citation Graph (, )][DBLP]


  68. Research and Application of the Transparent Data Encpryption in Intranet Data Leakage Prevention. [Citation Graph (, )][DBLP]


  69. Meshless deformable models for LV motion analysis. [Citation Graph (, )][DBLP]


  70. Domain specific architecture for next generation wireless communication. [Citation Graph (, )][DBLP]


  71. Analysis of Pi Series and Its Application to Image Encryption. [Citation Graph (, )][DBLP]


  72. Research on human activity recognition based on active learning. [Citation Graph (, )][DBLP]


  73. A fuzzy pattern recognition method of radar signal based on neural network. [Citation Graph (, )][DBLP]


  74. 3D cardiac motion tracking using Robust Point Matching and meshless deformable models. [Citation Graph (, )][DBLP]


  75. Tagged Mri Analysis Using Gabor Filters. [Citation Graph (, )][DBLP]


  76. LV Surface Reconstruction from Sparse TMRI Using Laplacian Surface Deformation and Optimization. [Citation Graph (, )][DBLP]


  77. LV Motion and Strain Computation from tMRI Based on Meshless Deformable Models. [Citation Graph (, )][DBLP]


  78. Fast Motion Tracking of Tagged MRI Using Angle-Preserving Meshless Registration. [Citation Graph (, )][DBLP]


  79. 3D Meshless Prostate Segmentation and Registration in Image Guided Radiotherapy. [Citation Graph (, )][DBLP]


  80. Construction of Neuroanatomical Shape Complex Atlas from 3D Brain MRI. [Citation Graph (, )][DBLP]


  81. Exploiting Branch Constraints without Exhaustive Path Enumeration. [Citation Graph (, )][DBLP]


  82. Hybrid Deformable Models for Medical Segmentation and Registration. [Citation Graph (, )][DBLP]


  83. R-ECS: reliable elastic computing services for building virtual computing environment. [Citation Graph (, )][DBLP]


  84. PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. [Citation Graph (, )][DBLP]


  85. Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy. [Citation Graph (, )][DBLP]


  86. An integrated approach to the prediction of domain-domain interactions. [Citation Graph (, )][DBLP]


  87. The Case for a Structured Approach to Managing Unstructured Data [Citation Graph (, )][DBLP]


  88. Comparing the Zagreb indices for graphs with small difference between the maximum and minimum degrees. [Citation Graph (, )][DBLP]


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