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Erik L. L. Sonnhammer: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer
    Automatic clustering of orthologs and inparalogs shared by multiple proteomes. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:9-15 [Conf]
  2. Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
    An HMM posterior decoder for sequence feature prediction that includes homology information. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:251-257 [Conf]
  3. Erik L. L. Sonnhammer, Richard Durbin
    An Expert System for Processing Sequence Homology Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:363-368 [Conf]
  4. Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh
    A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1998, pp:175-182 [Conf]
  5. Alistair M. Chalk, Erik L. L. Sonnhammer
    Computational antisense oligo prediction with a neural network model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:12, pp:1567-1575 [Journal]
  6. Alistair M. Chalk, Martin Wennerberg, Erik L. L. Sonnhammer
    Sfixem - graphical sequence feature display in Java. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:15, pp:2488-2490 [Journal]
  7. Sven Ekdahl, Erik L. L. Sonnhammer
    ChromoWheel: a new spin on eukaryotic chromosome visualization. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:4, pp:- [Journal]
  8. Arne Elofsson, Erik L. L. Sonnhammer
    A comparison of sequence and structure protein domain families as a basis for structural genomics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:6, pp:480-500 [Journal]
  9. Volker Hollich, Christian E. V. Storm, Erik L. L. Sonnhammer
    OrthoGUI: graphical presentation of Orthostrapper results. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:9, pp:1272-1273 [Journal]
  10. Raf M. Podowski, Erik L. L. Sonnhammer
    MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:7, pp:656-657 [Journal]
  11. Erik L. L. Sonnhammer, Richard Durbin
    A workbench for large-scale sequence homology analysis. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:3, pp:301-307 [Journal]
  12. H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff
    METASIM: object-oriented modelling of cell regulation. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:5, pp:443-449 [Journal]
  13. Christian E. V. Storm, Erik L. L. Sonnhammer
    NIFAS: visual analysis of domain evolution in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:4, pp:343-348 [Journal]
  14. Christian E. V. Storm, Erik L. L. Sonnhammer
    Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:1, pp:92-99 [Journal]
  15. Gustavo Camps-Valls, Alistair M. Chalk, Antonio J. Serrano-López, José David Martín-Guerrero, Erik L. L. Sonnhammer
    Profiled support vector machines for antisense oligonucleotide efficacy prediction. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:135- [Journal]
  16. Timo Lassmann, Erik L. L. Sonnhammer
    Kalign - an accurate and fast multiple sequence alignment algorithm. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:298- [Journal]
  17. Erik L. L. Sonnhammer, Volker Hollich
    Scoredist: A simple and robust protein sequence distance estimator. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:108- [Journal]
  18. Markus Wistrand, Erik L. L. Sonnhammer
    Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:99- [Journal]
  19. Markus Wistrand, Erik L. L. Sonnhammer
    Transition Priors for Protein Hidden Markov Models: An Empirical Study towards Maximum Discrimination. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:1, pp:181-193 [Journal]
  20. Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:276-280 [Journal]
  21. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer
    Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:260-262 [Journal]
  22. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:263-266 [Journal]
  23. Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy
    The Pfam protein families database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:138-141 [Journal]
  24. Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin
    Pfam: multiple sequence alignments and HMM-profiles of protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:320-322 [Journal]
  25. Kevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer
    Inparanoid: a comprehensive database of eukaryotic orthologs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:476-480 [Journal]
  26. Alistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer
    siRNAdb: a database of siRNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:131-134 [Journal]
  27. Saraswathi Abhiman, Erik L. L. Sonnhammer
    FunShift: a database of function shift analysis on protein subfamilies. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:197-200 [Journal]
  28. Timo Lassmann, Erik L. L. Sonnhammer
    Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:596-599 [Journal]
  29. Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
    Pfam: clans, web tools and services. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:247-251 [Journal]

  30. PfamAlyzer: domain-centric homology search. [Citation Graph (, )][DBLP]


  31. siRNA specificity searching incorporating mismatch tolerance data. [Citation Graph (, )][DBLP]


  32. jSquid: a Java applet for graphical on-line network exploration. [Citation Graph (, )][DBLP]


  33. Predicting protein function from domain content. [Citation Graph (, )][DBLP]


  34. Predicting protein function from domain content. [Citation Graph (, )][DBLP]


  35. Predicting protein function from domain content. [Citation Graph (, )][DBLP]


  36. DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System. [Citation Graph (, )][DBLP]


  37. Benchmarking homology detection procedures with low complexity filters. [Citation Graph (, )][DBLP]


  38. Comparative analysis and unification of domain-domain interaction networks. [Citation Graph (, )][DBLP]


  39. Automatic extraction of reliable regions from multiple sequence alignments. [Citation Graph (, )][DBLP]


  40. MetaTM - a consensus method for transmembrane protein topology prediction. [Citation Graph (, )][DBLP]


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