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Publications of Author

1. Harmen J. Bussemaker, Hao Li, Eric D. Siggia
   Regulatory Element Detection Using a Probabilistic Segmentation Model. [Citation Graph (0, 0)][DBLP]
   ISMB, 2000, pp:67-74 [Conf]
   
2. Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker
   Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2006, pp:141-149 [Conf]
   
3. Harmen J. Bussemaker, Hao Li, Eric D. Siggia
   Regulatory element detection using correlation with expression (abstract only). [Citation Graph (0, 0)][DBLP]
   RECOMB, 2001, pp:86- [Conf]
   
4. Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
   Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:31- [Journal]
   
5. Crispin Roven, Harmen J. Bussemaker
   REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2003, v:31, n:13, pp:3487-3490 [Journal]
   
6. André Boorsma, Barrett C. Foat, Daniel Vis, Frans Klis, Harmen J. Bussemaker
   T-profiler: scoring the activity of predefined groups of genes using gene expression data. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:592-595 [Journal]
   
7. 
   Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. [Citation Graph (, )][DBLP]
   
   
8. 
   Dissecting complex transcriptional responses using pathway-level scores based on prior information. [Citation Graph (, )][DBLP]