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Liisa Holm: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Andreas Heger, Liisa Holm
    Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:130-137 [Conf]
  2. Liisa Holm, Chris Sander
    3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:179-187 [Conf]
  3. Liisa Holm, Chris Sander
    Decision Support System for the Evolutionary Classification of Protein Structures. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:140-146 [Conf]
  4. Michael Lappe, Jong Park, Oliver Niggemann, Liisa Holm
    Generating protein interaction maps from incomplete data: application to fold assignment. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:149-156 [Conf]
  5. Andreas Heger, Michael Lappe, Liisa Holm
    Accurate detection of very sparse sequence motifs. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:139-147 [Conf]
  6. Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    PSIbase: a database of Protein Structural Interactome map (PSIMAP). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2541-2543 [Journal]
  7. Andreas Heger, Liisa Holm
    Picasso: generating a covering set of protein family profiles. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:3, pp:272-279 [Journal]
  8. Liisa Holm, Jong Park
    DaliLite workbench for protein structure comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:6, pp:566-567 [Journal]
  9. Liisa Holm, Chris Sander
    Removing near-neighbour redundancy from large protein sequence collections. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:5, pp:423-429 [Journal]
  10. Cédric Notredame, Liisa Holm, Desmond G. Higgins
    COFFEE: an objective function for multiple sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:5, pp:407-422 [Journal]
  11. Jong Park, Sabine Dietmann, Andreas Heger, Liisa Holm
    Estimating the significance of sequence order in protein secondary structure and prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:978-987 [Journal]
  12. Jong Park, Liisa Holm, Cyrus Chothia
    Sequence search algorithm assessment and testing toolkit (SAT). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:2, pp:104-110 [Journal]
  13. Jong Park, Liisa Holm, Andreas Heger, Cyrus Chothia
    RSDB: representative protein sequence databases have high information content. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:5, pp:458-464 [Journal]
  14. Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm
    Bayesian search of functionally divergent protein subgroups and their function specific residues. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:20, pp:2466-2474 [Journal]
  15. Andreas Heger, Michael Lappe, Liisa Holm
    Accurate Detection of Very Sparse Sequence Motifs. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:5, pp:843-857 [Journal]
  16. Sabine Dietmann, Jong Park, Cédric Notredame, Andreas Heger, Michael Lappe, Liisa Holm
    A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:55-57 [Journal]
  17. Liisa Holm, Chris Sander
    Protein folds and families: sequence and structure alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:244-247 [Journal]
  18. Liisa Holm, Chris Sander
    The FSSP database: fold classification based on structure-structure alignment of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1996, v:24, n:1, pp:206-209 [Journal]
  19. Liisa Holm, Chris Sander
    Dali/FSSP classification of three-dimensional protein folds. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:231-234 [Journal]
  20. Liisa Holm, Chris Sander
    Touring protein fold space with Dali/FSSP. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:316-319 [Journal]
  21. Matti Kankainen, Liisa Holm
    POBO, transcription factor binding site verification with bootstrapping. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:222-229 [Journal]
  22. Andreas Heger, Christopher Andrew Wilton, Ashwin Sivakumar, Liisa Holm
    ADDA: a domain database with global coverage of the protein universe. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:188-191 [Journal]
  23. Matti Kankainen, Liisa Holm
    POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:427-431 [Journal]
  24. Matti Kankainen, Petri Pehkonen, Päivi Rosenstöm, Petri Törönen, Garry Wong, Liisa Holm
    POXO: a web-enabled tool series to discover transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:534-540 [Journal]

  25. Evaluation of Novel Protein Structure Comparison Algorithms Based on Objective Function Rankings. [Citation Graph (, )][DBLP]


  26. The global trace graph, a novel paradigm for searching protein sequence databases. [Citation Graph (, )][DBLP]


  27. LOCP - locating pilus operons in Gram-positive bacteria. [Citation Graph (, )][DBLP]


  28. Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. [Citation Graph (, )][DBLP]


  29. Generation of Gene Ontology benchmark datasets with various types of positive signal. [Citation Graph (, )][DBLP]


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