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Trey Ideker: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel
    Discovering regulatory and signalling circuits in molecular interaction networks. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:233-240 [Conf]
  2. Sourav Bandyopadhyay, Ryan M. Kelley, Trey Ideker
    Discovering Regulated Networks During HIV-1 Latency and Reactivation. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:354-366 [Conf]
  3. Trey Ideker, Erik K. Neumann, Vincent Schächter
    Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:471-473 [Conf]
  4. Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan
    Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:1-13 [Conf]
  5. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:282-289 [Conf]
  6. Trey Ideker, Alfonso Valencia
    Bioinformatics in the human interactome project. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:24, pp:2973-2974 [Journal]
  7. Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood
    Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:6, pp:805-817 [Journal]
  8. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:835-846 [Journal]
  9. Chen-Hsiang Yeang, Trey Ideker, Tommi Jaakkola
    Physical Network Models. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:243-262 [Journal]
  10. Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker
    PathBLAST: a tool for alignment of protein interaction networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:83-88 [Journal]
  11. Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam
    VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:627-632 [Journal]
  12. Christopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos
    enoLOGOS: a versatile web tool for energy normalized sequence logos. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:389-392 [Journal]
  13. H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Ideker
    CellCircuits: a database of protein network models. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:538-545 [Journal]
  14. Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
    Comparison of Protein-Protein Interaction Confidence Assignment Schemes. [Citation Graph (0, 0)][DBLP]
    Systems Biology and Regulatory Genomics, 2005, pp:39-50 [Conf]

  15. SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. [Citation Graph (, )][DBLP]


  16. Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood. [Citation Graph (, )][DBLP]


  17. NetworkBLAST: comparative analysis of protein networks. [Citation Graph (, )][DBLP]


  18. Papers on normalization, variable selection, classification or clustering of microarray data. [Citation Graph (, )][DBLP]


  19. A direct comparison of protein interaction confidence assignment schemes. [Citation Graph (, )][DBLP]


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