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Jan Gorodkin: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jan Gorodkin, Laurie J. Heyer, Gary D. Stormo
    Finding Common Sequence and Structure Motifs in a Set of RNA Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:120-123 [Conf]
  2. Jan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak
    Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:95-105 [Conf]
  3. Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo
    Displaying the information contents of structural RNA alignments: the structure logos. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:6, pp:583-586 [Journal]
  4. Jan Gorodkin, Hans Henrik Stærfeldt, Ole Lund, Søren Brunak
    MatrixPlot: visualizing sequence constraints. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:9, pp:769-770 [Journal]
  5. Jan Gorodkin, Christian Zwieb, Bjarne Knudsen
    Semi-automated update and cleanup of structural RNA alignment databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:7, pp:642-645 [Journal]
  6. Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
    Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1815-1824 [Journal]
  7. Jan Gorodkin
    Comparing two K-category assignments by a K-category correlation coefficient. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2004, v:28, n:5-6, pp:367-374 [Journal]
  8. Jan Gorodkin, Bodil Søgaard, Hanne Bay, Hans Doll, Per Kølster, Søren Brunak
    Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2001, v:25, n:3, pp:301-307 [Journal]
  9. Bjarne Knudsen, Ebbe Sloth Andersen, Christian K. Damgaard, J. Kjems, Jan Gorodkin
    Evolutionary rate variation and RNA secondary structure prediction. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2004, v:28, n:3, pp:219-226 [Journal]
  10. Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, P. Jensen, M. Öhman, Merete Fredholm
    MicroRNA sequence motifs reveal asymmetry between the stem arms. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2006, v:30, n:4, pp:249-254 [Journal]
  11. Jan Gorodkin
    Orbits of Boolean Functions. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1997, v:75, n:3, pp:269-275 [Journal]
  12. Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther
    A Quantitative Study Of Pruning By Optimal Brain Damage. [Citation Graph (0, 0)][DBLP]
    Int. J. Neural Syst., 1993, v:4, n:2, pp:159-169 [Journal]
  13. Jan Gorodkin, Lars Kai Hansen, Benny Lautrup, Sara A. Solla
    Universal Distribution of Saliencies for Pruning in Layered Neural Networks. [Citation Graph (0, 0)][DBLP]
    Int. J. Neural Syst., 1997, v:8, n:5-6, pp:489-498 [Journal]
  14. Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, Tore Samuelsson
    SRPDB (Signal Recognition Particle Database). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:169-170 [Journal]
  15. Bjarne Knudsen, Jacek Wower, Christian Zwieb, Jan Gorodkin
    tmRDB (tmRNA database). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:171-172 [Journal]
  16. Magnus Alm Rosenblad, Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, Tore Samuelsson
    SRPDB: Signal Recognition Particle Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:363-364 [Journal]
  17. Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, Jody Burks, Jacek Wower
    tmRDB (tmRNA database). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:446-447 [Journal]
  18. Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
    The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:650-653 [Journal]
  19. Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb
    The tmRDB and SRPDB resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:163-168 [Journal]
  20. Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin
    Multiple structural alignment and clustering of RNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:8, pp:926-932 [Journal]

  21. Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search. [Citation Graph (, )][DBLP]


  22. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. [Citation Graph (, )][DBLP]


  23. Structural profiles of human miRNA families from pairwise clustering. [Citation Graph (, )][DBLP]


  24. Sequence assembly. [Citation Graph (, )][DBLP]


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