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Mark Diekhans: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Tommi Jaakkola, Mark Diekhans, David Haussler
    Using the Fisher Kernel Method to Detect Remote Protein Homologies. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:149-158 [Conf]
  2. Leslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey
    Sequence Analysis With the Kestrel SIMD Parallel Processor. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:263-274 [Conf]
  3. Krishna M. Roskin, Mark Diekhans, David Haussler
    Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:257-266 [Conf]
  4. Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, David Haussler
    The UCSC Known Genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:9, pp:1036-1046 [Journal]
  5. Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
    LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:12, pp:2814-2820 [Journal]
  6. Tommi Jaakkola, Mark Diekhans, David Haussler
    A Discriminative Framework for Detecting Remote Protein Homologies. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:95-114 [Journal]
  7. Krishna M. Roskin, Mark Diekhans, David Haussler
    Score Functions for Determining Regional Conservation in Two-Species Local Alignments. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:395-411 [Journal]
  8. Donna Karolchik, R. Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Y. T. Lu, Krishna M. Roskin, M. Schwartz, Charles W. Sugnet, Daryl J. Thomas, R. J. Weber, David Haussler, W. James Kent
    The UCSC Genome Browser Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:51-54 [Journal]
  9. Fan Hsu, Tom H. Pringle, Robert M. Kuhn, Donna Karolchik, Mark Diekhans, David Haussler, W. James Kent
    The UCSC Proteome Browser. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:454-458 [Journal]
  10. Angela S. Hinrichs, Donna Karolchik, R. Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, J. S. Pedersen, A. Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, R. J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
    The UCSC Genome Browser Database: update 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:590-598 [Journal]
  11. Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, A. Pohl, J. S. Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, R. Baertsch, David Haussler, W. James Kent
    The UCSC genome browser database: update 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:668-673 [Journal]
  12. Andrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey
    The UCSC Kestrel Parallel Processor. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2005, v:16, n:1, pp:80-92 [Journal]

  13. Cactus Graphs for Genome Comparisons. [Citation Graph (, )][DBLP]


  14. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. [Citation Graph (, )][DBLP]


  15. LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. [Citation Graph (, )][DBLP]


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