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Adam C. Siepel: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Vladimir Jojic, Nebojsa Jojic, Christopher Meek, Dan Geiger, Adam C. Siepel, David Haussler, David Heckerman
    Efficient approximations for learning phylogenetic HMM models from data. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:161-168 [Conf]
  2. Adam C. Siepel, Katherine S. Pollard, David Haussler
    New Methods for Detecting Lineage-Specific Selection. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:190-205 [Conf]
  3. Adam C. Siepel
    An algorithm to enumerate all sorting reversals. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:281-290 [Conf]
  4. Adam C. Siepel, David Haussler
    Combining phylogenetic and hidden Markov models in biosequence analysis. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:277-286 [Conf]
  5. Adam C. Siepel, David Haussler
    Computational identification of evolutionarily conserved exons. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:177-186 [Conf]
  6. Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu
    Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:521-536 [Conf]
  7. Adam C. Siepel, Bernard M. E. Moret
    Finding an Optimal Inversion Median: Experimental Results. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:189-203 [Conf]
  8. Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral
    ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:83-94 [Journal]
  9. Adam C. Siepel, Andrew N. Tolopko, Andrew D. Farmer, Peter A. Steadman, Faye D. Schilkey, B. Dawn Perry, William D. Beavis
    An integration platform for heterogeneous bioinformatics software components. [Citation Graph (0, 0)][DBLP]
    IBM Systems Journal, 2001, v:40, n:2, pp:570-591 [Journal]
  10. Adam C. Siepel
    An Algorithm to Enumerate Sorting Reversals for Signed Permutations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:575-597 [Journal]
  11. Adam C. Siepel, David Haussler
    Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:413-428 [Journal]
  12. Carol Harger, M. P. Skupski, E. Allen, C. Clark, David Crowley, Emily Dickinson, D. Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields, L. Flores, L. Harris, Gifford Keen, Mo Manning, Michael P. McLeod, John O'Neill, Maria Pumilia, Rhonda Reinert, David Rider, John Rohrlich, Y. Romero, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, P. A. Schad
    The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:18-23 [Journal]
  13. Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter Hraber, Donald Kiphart, L. Krakowski, Mia McLeod, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, G. Singh, D. Stamper, Peter A. Steadman, Nina Thayer, R. Thompson, P. Wargo, Mark Waugh, J. J. Zhuang, P. A. Schad
    The Genome Sequence DataBase (GSDB): improving data quality and data access. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:21-26 [Journal]
  14. M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, W. Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel, D. Stamper, Nina Thayer, R. Thompson, J. Wortman, J. J. Zhuang, Carol Harger
    The Genome Sequence DataBase: towards an integrated functional genomics resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:35-38 [Journal]
  15. Angela S. Hinrichs, Donna Karolchik, R. Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, J. S. Pedersen, A. Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, R. J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
    The UCSC Genome Browser Database: update 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:590-598 [Journal]
  16. Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, A. Pohl, J. S. Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, R. Baertsch, David Haussler, W. James Kent
    The UCSC genome browser database: update 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:668-673 [Journal]

  17. Reconstructing the Evolutionary History of Complex Human Gene Clusters. [Citation Graph (, )][DBLP]


  18. Reconstructing Histories of Complex Gene Clusters on a Phylogeny. [Citation Graph (, )][DBLP]


  19. Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny [Citation Graph (, )][DBLP]


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