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Publications of Author

1. Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp
   Distance based algorithms for small biomolecule classification and structural similarity search. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2006, pp:243-251 [Conf]
   
2. Artem Cherkasov, Steven J. M. Jones
   Structural characterization of genomes by large scale sequence-structure threading. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:37- [Journal]
   
3. Artem Cherkasov, Steven J. M. Jones
   An approach to large scale identification of non-obvious structural similarities between proteins. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:61- [Journal]
   
4. Artem Cherkasov, Shannan J. Ho Sui, Robert C. Brunham, Steven J. M. Jones
   Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:101- [Journal]
   
5. Michael Hsing, Joel L. Bellenson, Conor Shankey, Artem Cherkasov
   Modeling of cell signaling pathways in macrophages by semantic networks. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:156- [Journal]
   
6. Yvonne Y. Li, Steven J. M. Jones, Artem Cherkasov
   Selective Targeting of Indel-inferred Differences in Spatial Structures of Homologous Proteins. [Citation Graph (0, 0)][DBLP]
   J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:403-414 [Journal]
   
7. Artem Cherkasov
   Inductive Electronegativity Scale. Iterative Calculation of Inductive Partial Charges. [Citation Graph (0, 0)][DBLP]
   Journal of Chemical Information and Computer Sciences, 2003, v:43, n:6, pp:2039-2047 [Journal]
   
8. Artem Cherkasov
   Can 'Bacterial-Metabolite-Likeness' Model Improve Odds of 'in Silico' Antibiotic Discovery?. [Citation Graph (0, 0)][DBLP]
   Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1214-1222 [Journal]
   
9. Artem Cherkasov, Mats Jonsson
   A New Method for Estimation of Homolytic C-H Bond Dissociation Enthalpies. [Citation Graph (0, 0)][DBLP]
   Journal of Chemical Information and Computer Sciences, 2000, v:40, n:5, pp:1222-1226 [Journal]
   
10. Artem Cherkasov, Mats Jonsson
    Substituent Effects on Thermochemical Properties of Free Radicals. New Substituent Scales for C-Centered Radicals. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Computer Sciences, 1998, v:38, n:6, pp:1151-1156 [Journal]
    
11. Artem Cherkasov, Mats Jonsson
    Substituent Effects on Thermochemical Properties of C-, N-, O-, and S-Centered Radicals. Physical Interpretation of Substituent Effects. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Computer Sciences, 1999, v:39, n:6, pp:1057-1063 [Journal]
    
12. Artem Cherkasov, Zheng Shi, Yvonne Y. Li, Steven J. M. Jones, Magid Fallahi, Geoffrey L. Hammond
    'Inductive' Charges on Atoms in Proteins: Comparative Docking with the Extended Steroid Benchmark Set and Discovery of a Novel SHBG Ligand. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2005, v:45, n:6, pp:1842-1853 [Journal]
    
13. Christopher D. Fjell, Robert E. W. Hancock, Artem Cherkasov
    AMPer: a database and an automated discovery tool for antimicrobial peptides. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1148-1155 [Journal]
    
14. Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp
    Novel approaches for small biomolecule classification and structural similarity search. [Citation Graph (0, 0)][DBLP]
    SIGKDD Explorations, 2007, v:9, n:1, pp:14-21 [Journal]
    
15. 
    Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. [Citation Graph (, )][DBLP]
    
    
16. 
    The Relation between Indel Length and Functional Divergence: A Formal Study. [Citation Graph (, )][DBLP]
    
    
17. 
    Relationship between insertion/deletion (indel) frequency of proteins and essentiality. [Citation Graph (, )][DBLP]
    
    
18. 
    Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins. [Citation Graph (, )][DBLP]