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Publications of Author

1. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
   GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. [Citation Graph (0, 0)][DBLP]
   ISMB, 1998, pp:95-104 [Conf]
   
2. Vladimir N. Babenko, P. S. Kosarev, Oleg V. Vishnevsky, Victor G. Levitsky, V. V. Basin, Anatoly S. Frolov
   Investigating extended regulatory regions of genomic DNA sequences. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:644-653 [Journal]
   
3. Alexander G. Bachinsky, Anatoly S. Frolov, Andrey N. Naumochkin, Lily Ph. Nizolenko, Andrey A. Yarigin
   PROF_ PAT 1.3: Updated database of patterns used to detect local similarities. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2000, v:16, n:4, pp:358-366 [Journal]
   
4. Anatoly S. Frolov, I. S. Pika, A. M. Eroshkin
   ProMSED: protein multiple sequence editor for Windows 3.11/95. [Citation Graph (0, 0)][DBLP]
   Computer Applications in the Biosciences, 1997, v:13, n:3, pp:243-248 [Journal]
   
5. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
   Integrated databases and computer systems for studying eukaryotic gene expression. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:669-686 [Journal]
   
6. Alexey V. Kochetov, Mikhail P. Ponomarenko, Anatoly S. Frolov, L. L. Kisselev, Nikolay A. Kolchanov
   Prediction of eukaryotic mRNA translational properties. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:704-712 [Journal]
   
7. Victor G. Levitsky, Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay A. Kolchanov
   Nucleosomal DNA property database. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:582-592 [Journal]
   
8. Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, L. K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton
   Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:687-703 [Journal]
   
9. Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton
   Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:631-643 [Journal]
   
10. Julia V. Ponomarenko, Mikhail P. Ponomarenko, Anatoly S. Frolov, Denis G. Vorobiev, G. Christian Overton, Nikolay A. Kolchanov
    Conformational and physicochemical DNA features specific for transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:7, pp:654-668 [Journal]
    
11. Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
    ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:284-287 [Journal]
    
12. Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko
    rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:118-121 [Journal]
    
13. Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai
    rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:312-316 [Journal]
    
14. Julia V. Ponomarenko, Galina Orlova, Anatoly S. Frolov, Mikhail S. Gelfand, Mikhail P. Ponomarenko
    SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:195-199 [Journal]
    
15. Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov
    SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:205-208 [Journal]