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Publications of Author

1. Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang
   Mining ChIP-chip data for transcription factor and cofactor binding sites. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2005, pp:403-412 [Conf]
   
2. Michael Q. Zhang
   Computational Molecular Biology of Genome Expression and Regulation. [Citation Graph (0, 0)][DBLP]
   PReMI, 2005, pp:31-38 [Conf]
   
3. Michael Q. Zhang
   Discriminant Analysis and Its Application in DNA Sequence Motif Recognition. [Citation Graph (0, 0)][DBLP]
   Briefings in Bioinformatics, 2000, v:1, n:4, pp:331-342 [Journal]
   
4. Dustin E. Schones, Pavel Sumazin, Michael Q. Zhang
   Similarity of position frequency matrices for transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:3, pp:307-313 [Journal]
   
5. Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith, Theresa Zhang, Michael Q. Zhang
   DWE: Discriminating Word Enumerator. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:1, pp:31-38 [Journal]
   
6. Jack E. Tabaska, Ramana V. Davuluri, Michael Q. Zhang
   Identifying the 3'-terminal exon in human DNA. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:7, pp:602-607 [Journal]
   
7. Michael Q. Zhang, T. G. Marr
   A weight array method for splicing signal analysis. [Citation Graph (0, 0)][DBLP]
   Computer Applications in the Biosciences, 1993, v:9, n:5, pp:499-509 [Journal]
   
8. Theresa Zhang, Michael Q. Zhang
   Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:12, pp:1232-1233 [Journal]
   
9. J. Zhu, Michael Q. Zhang
   SCPD: a promoter database of the yeast Saccharomyces cerevisiae. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:607-611 [Journal]
   
10. Fang Fang, Shicai Fan, Xuegong Zhang, Michael Q. Zhang
    Predicting methylation status of CpG islands in the human brain. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:18, pp:2204-2209 [Journal]
    
11. M. Juanita Martinez, Andrew D. Smith, Bilan Li, Michael Q. Zhang, Kevin S. Harrod
    Computational prediction of novel components of lung transcriptional networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:1, pp:21-29 [Journal]
    
12. Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang
    Computing exact P-values for DNA motifs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:5, pp:531-537 [Journal]
    
13. Chaolin Zhang, Hai-Ri Li, Jian-Bing Fan, Jessica Wang-Rodriguez, Tracy Downs, Xiang-Dong Fu, Michael Q. Zhang
    Profiling alternatively spliced mRNA isoforms for prostate cancer classification. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:202- [Journal]
    
14. Michael Q. Zhang
    Promoter Analysis of Co-regulated Genes in the Yeast Genome. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1999, v:23, n:3-4, pp:233-250 [Journal]
    
15. Fan Long, Hong Liu, Chang S. Hahn, Pavel Sumazin, Michael Q. Zhang, Asher Zilberstein
    Genome-wide prediction and analysis of function-specific transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:4, n:, pp:- [Journal]
    
16. Luca Cartegni, Jinhua Wang, Zhengwei Zhu, Michael Q. Zhang, Adrian R. Krainer
    ESEfinder: a web resource to identify exonic splicing enhancers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3568-3571 [Journal]
    
17. Fang Zhao, Zhenyu Xuan, Lihua Liu, Michael Q. Zhang
    TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:103-107 [Journal]
    
18. Chaolin Zhang, Xuegong Zhang, Michael Q. Zhang, Yanda Li
    Neighbor number, valley seeking and clustering. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition Letters, 2007, v:28, n:2, pp:173-180 [Journal]
    
19. 
    Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure. [Citation Graph (, )][DBLP]
    
    
20. 
    OSCAR: One-class SVM for accurate recognition of cis-elements. [Citation Graph (, )][DBLP]
    
    
21. 
    Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species. [Citation Graph (, )][DBLP]
    
    
22. 
    ZOOM! Zillions of oligos mapped. [Citation Graph (, )][DBLP]
    
    
23. 
    Updates to the RMAP short-read mapping software. [Citation Graph (, )][DBLP]
    
    
24. 
    Statistical significance of cis-regulatory modules. [Citation Graph (, )][DBLP]
    
    
25. 
    Using quality scores and longer reads improves accuracy of Solexa read mapping. [Citation Graph (, )][DBLP]
    
    
26. 
    Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells. [Citation Graph (, )][DBLP]
    
    
27. 
    Computational analyses of eukaryotic promoters. [Citation Graph (, )][DBLP]
    
    
28. 
    Gene set-based module discovery in the breast cancer transcriptome. [Citation Graph (, )][DBLP]
    
    
29. 
    The Seventh Asia Pacific Bioinformatics Conference (APBC2009). [Citation Graph (, )][DBLP]
    
    
30. 
    SFSSClass: an integrated approach for miRNA based tumor classification. [Citation Graph (, )][DBLP]