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Bruce A. Shapiro: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jason Tsong-Li Wang, Gung-Wei Chirn, Thomas G. Marr, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang
    Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results. [Citation Graph (13, 23)][DBLP]
    SIGMOD Conference, 1994, pp:115-125 [Conf]
  2. Bruce A. Shapiro, David Bengali, Wojciech Kasprzak
    Determination of RNA folding pathway functional intermediates using a massively parallel genetic algorithm (abstract of invited talk). [Citation Graph (0, 0)][DBLP]
    BIOKDD, 2001, pp:1- [Conf]
  3. Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Chia-Yo Chang
    Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    KDD, 1996, pp:70-75 [Conf]
  4. Jason Tsong-Li Wang, Xiong Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang
    Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. [Citation Graph (0, 0)][DBLP]
    KDD, 1999, pp:307-311 [Conf]
  5. Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang
    Automated Discovery of Active Motifs in Three Dimensional Molecules. [Citation Graph (0, 0)][DBLP]
    KDD, 1997, pp:89-95 [Conf]
  6. Moon K. Kim, Robert L. Jernigan, Bruce A. Shapiro, Gregory S. Chirikjian
    A Study of Conformational Changes in Macromolecules: The Coarse-Grained Elastic Network Interpolation Method. [Citation Graph (0, 0)][DBLP]
    METMBS, 2003, pp:140-145 [Conf]
  7. Jason Tsong-Li Wang, Xiong Wang, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg
    An Approximate Search Engine for Structural Databases. [Citation Graph (0, 0)][DBLP]
    SIGMOD Conference, 2000, pp:584- [Conf]
  8. Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Kathleen M. Currey, Jacob V. Maizel
    A computational procedure for assessing the significance of RNA secondary structure. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:1, pp:7-18 [Journal]
  9. Kathleen M. Currey, Bruce A. Shapiro
    Secondary structure computer prediction of the poliovirus 5' non-coding region is improved by a genetic algorithm. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:1, pp:1-12 [Journal]
  10. Wojciech Kasprzak, Bruce A. Shapiro
    Stem Trace: an interactive visual tool for comparative RNA structure analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:1, pp:16-31 [Journal]
  11. Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel
    RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1989, v:5, n:3, pp:205-210 [Journal]
  12. Bruce A. Shapiro
    An algorithm for comparing multiple RNA secondary structures. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1988, v:4, n:3, pp:387-393 [Journal]
  13. Bruce A. Shapiro, Jin Chu Wu
    An annealing mutation operator in the genetic algorithms for RNA folding. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:3, pp:171-180 [Journal]
  14. Bruce A. Shapiro, Jin Chu Wu
    Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:4, pp:459-471 [Journal]
  15. Bruce A. Shapiro, Jin Chu Wu, David Bengali, Mark J. Potts
    The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:137-148 [Journal]
  16. Bruce A. Shapiro, Kaizhong Zhang
    Comparing multiple RNA secondary structures using tree comparisons. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:4, pp:309-318 [Journal]
  17. Jason Tsong-Li Wang, Steve Rozen, Bruce A. Shapiro, Dennis Shasha, Zhiyuan Wang, Maisheng Yin
    New Techniques for DNA Sequence Classification. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:2, pp:209-218 [Journal]
  18. Xiong Wang, Jason Tsong-Li Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang
    An Index Structure for Data Mining and Clustering. [Citation Graph (0, 0)][DBLP]
    Knowl. Inf. Syst., 2000, v:2, n:2, pp:161-184 [Journal]
  19. Bruce A. Shapiro, Jacob V. Maizel, L. E. Lipkin, Kathleen M. Currey, Colin G. Whitney
    Generating non-overlapping displays of nucleic acid secondary structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:75-88 [Journal]
  20. Bruce A. Shapiro, Ruth Nussinov, L. E. Lipkin, Jacob V. Maizel
    A sequence analysis system encompassing rules for DNA helical distortion. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1986, v:14, n:1, pp:75-86 [Journal]
  21. Eckart Bindewald, Thomas D. Schneider, Bruce A. Shapiro
    CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:405-411 [Journal]
  22. Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Kathleen M. Currey
    An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Pattern Anal. Mach. Intell., 1998, v:20, n:8, pp:889-895 [Journal]
  23. Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Jacob V. Maizel
    Optimization of an RNA Folding Algorithm for Parallel Architectures. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 1998, v:24, n:11, pp:1617-1634 [Journal]
  24. Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang
    Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Knowl. Data Eng., 2002, v:14, n:4, pp:731-749 [Journal]
  25. Jason Tsong-Li Wang, Dongrong Wen, Bruce A. Shapiro, Katherine G. Herbert, Jing Li, Kaushik Ghosh
    Toward an Integrated RNA Motif Database. [Citation Graph (0, 0)][DBLP]
    DILS, 2007, pp:27-36 [Conf]

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