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Publications of Author

1. Rachel Karchin, Libusha Kelly, Andrej Sali
   Improving Functional Annotation of Non-Synonomous SNPs with Information Theory. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
   
2. Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin
   The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:10, pp:859-861 [Journal]
   
3. Chris Burge, Andrej Sali, Mark Borodovsky
   The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA). [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:11, pp:865-866 [Journal]
   
4. Fred P. Davis, Andrej Sali
   PIBASE: a comprehensive database of structurally defined protein interfaces. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:9, pp:1901-1907 [Journal]
   
5. Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
   EVA: continuous automatic evaluation of protein structure prediction servers. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:12, pp:1242-1243 [Journal]
   
6. András Fiser, Andrej Sali
   ModLoop: automated modeling of loops in protein structures. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:18, pp:2500-2501 [Journal]
   
7. Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali
   ModView, visualization of multiple protein sequences and structures. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:1, pp:165-166 [Journal]
   
8. Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
   LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:12, pp:2814-2820 [Journal]
   
9. Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali
   DBAli: a database of protein structure alignments. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:8, pp:746-747 [Journal]
   
10. Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali
    LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:1, pp:200-201 [Journal]
    
11. Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
    Tools for comparative protein structure modeling and analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3375-3380 [Journal]
    
12. Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
    EVA: evaluation of protein structure prediction servers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3311-3315 [Journal]
    
13. Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
    MODBASE, a database of annotated comparative protein structure models, and associated resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:217-222 [Journal]
    
14. Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali
    MODBASE, a database of annotated comparative protein structure models. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:255-259 [Journal]
    
15. Roberto Sánchez, Ursula Pieper, Nebojsa Mirkovic, Paul I. W. De Bakker, Edward Wittenstein, Andrej Sali
    MODBASE, a database of annotated comparative protein structure models. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:250-253 [Journal]
    
16. Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
    MODBASE: a database of annotated comparative protein structure models and associated resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:291-295 [Journal]
    
17. 
    Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily. [Citation Graph (, )][DBLP]
    
    
18. 
    ModLink+: improving fold recognition by using protein-protein interactions. [Citation Graph (, )][DBLP]
    
    
19. 
    Prediction of protease substrates using sequence and structure features. [Citation Graph (, )][DBLP]
    
    
20. 
    Prediction of enzyme function by combining sequence similarity and protein interactions. [Citation Graph (, )][DBLP]
    
    
21. 
    The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. [Citation Graph (, )][DBLP]