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Akihiko Konagaya :
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Hiroshi Kobayashi , Ryuzo Azuma , Akihiko Konagaya Kinetic Analysis of Ligand-Receptor Complex Formation with the Aid of Computer Simulation. [Citation Graph (0, 0)][DBLP ] AINA Workshops (1), 2007, pp:727-732 [Conf ] Akihiko Konagaya A Stochastic Approach to Genetic Information Processing. [Citation Graph (0, 0)][DBLP ] ALT, 1992, pp:25-36 [Conf ] Mitsuhiro Okada , Yutaro Sugimoto , Sumi Yoshikawa , Akihiko Konagaya Drug Interaction Ontology (DIO) and the Resource-Sensitive Logical Inferences. [Citation Graph (0, 0)][DBLP ] Essays Dedicated to Joseph A. Goguen, 2006, pp:616-642 [Conf ] Akihiko Konagaya OBIGrid: Towards the 'Ba' for Sharing Resources, Services and Knowledge for Bioinformatics. [Citation Graph (0, 0)][DBLP ] CCGRID, 2006, pp:37- [Conf ] Fumikazu Konishi , Manabu Ishii , Shingo Ohki , Ryo Umestu , Akihiko Konagaya RABC: A Conceptual Design of Pervasive Infrastructure for Browser Computing based on Ajax technologies. [Citation Graph (0, 0)][DBLP ] CCGRID, 2007, pp:661-672 [Conf ] Junko Hosaka , Judice L. Y. Koh , Akihiko Konagaya Effect of utilizing terminology on extraction of protein-protein interaction information from biomedical literature. [Citation Graph (0, 0)][DBLP ] EACL, 2003, pp:107-110 [Conf ] Fumikazu Konishi , Manabu Ishii , Shingo Ohki , Yusuke Hamano , Shuichi Fukuda , Akihiko Konagaya Improving the Research Environment of High Performance Computing for Non-cluster Experts Based on Knoppix Instant Computing Technology. [Citation Graph (0, 0)][DBLP ] Euro-Par, 2006, pp:1169-1178 [Conf ] Shingo Masuno , Tsutomu Maruyama , Yoshiki Yamaguchi , Akihiko Konagaya Multidimensional Dynamic Programming for Homology Search on Distributed Systems. [Citation Graph (0, 0)][DBLP ] Euro-Par, 2006, pp:1127-1137 [Conf ] Craig A. Stewart , Michael Schroeder , Concettina Guerra , Akihiko Konagaya Topic 17: High-Performance Bioinformatics. [Citation Graph (0, 0)][DBLP ] Euro-Par, 2006, pp:1125-1126 [Conf ] Hidenori Itoh , Hidetoshi Monoi , Shigeki Shibayama , Nobuyoshi Miyazaki , Haruo Yokota , Akihiko Konagaya Knowledge Base System in Logic Programming Paradigm. [Citation Graph (0, 0)][DBLP ] FGCS, 1988, pp:37-53 [Conf ] Koichi Konishi , Tsutomu Maruyama , Akihiko Konagaya , Kaoru Yoshida , Takashi Chikayama Implementing Streams on Parallel Machines with Distributed Memory. [Citation Graph (0, 0)][DBLP ] FGCS, 1992, pp:791-798 [Conf ] Shingo Masuno , Tsutomu Maruyama , Yoshiki Yamaguchi , Akihiko Konagaya Multidimensional Dynamic Programming for Homology Search. [Citation Graph (0, 0)][DBLP ] FPL, 2005, pp:173-178 [Conf ] Yoshiki Yamaguchi , Tsutomu Maruyama , Akihiko Konagaya Three-Dimensional Dynamic Programming for Homology Search. [Citation Graph (0, 0)][DBLP ] FPL, 2004, pp:505-515 [Conf ] Yoshiki Yamaguchi , Yosuke Miyajima , Tsutomu Maruyama , Akihiko Konagaya High Speed Homology Search Using Run-Time Reconfiguration. [Citation Graph (0, 0)][DBLP ] FPL, 2002, pp:281-291 [Conf ] Yoshiki Yamaguchi , Tsutomu Maruyama , Ryuzo Azuma , Akihiko Konagaya Spatiotemporal Simulation of a Single Living Cell. [Citation Graph (0, 0)][DBLP ] FPT, 2005, pp:267-274 [Conf ] Minoru Asogawa , Yukiko Fujiwara , Akihiko Konagaya A combination of a functional motif model and a structural motif model for a database validation. [Citation Graph (0, 0)][DBLP ] HICSS (5), 1995, pp:174-183 [Conf ] Atsushi Atarashi , Akihiko Konagaya , Shinichi Habata , Minoru Yokota Implementation and Evaluation of Dynamic Predicates on the Sequential Inference Machine CHI. [Citation Graph (0, 0)][DBLP ] ICCL, 1990, pp:236-244 [Conf ] Aki Hasegawa , Kazumi Kuriyama-Matsumura , Xiaomei Yu , Mariko Hatakeyama , Akihiko Konagaya Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways. [Citation Graph (0, 0)][DBLP ] ICDE Workshops, 2005, pp:1157- [Conf ] Tsutomu Maruyama , Tetsuya Hirose , Akihiko Konagaya A Fine-Grained Parallel Genetic Algorithm for Distributed Parallel Systems. [Citation Graph (0, 0)][DBLP ] ICGA, 1993, pp:184-190 [Conf ] Kenji Yamanishi , Akihiko Konagaya Learning Stochastic Motifs from Genetic Sequences. [Citation Graph (0, 0)][DBLP ] ML, 1991, pp:467-471 [Conf ] Ryuzo Azuma , Tetsuji Kitagawa , Hiroshi Kobayashi , Akihiko Konagaya Particle Simulation Approach for Sub-cellular Dynamics and Interactions of Biological Molecules. [Citation Graph (0, 0)][DBLP ] IMSCCS (1), 2006, pp:150-157 [Conf ] Ryosei Nakazaki , Akihiko Konagaya , Shinichi Habata , Hideo Shimazu , Mamoru Umemura , Masahiro Yamamoto , Minoru Yokota , Takashi Chikayama Design of a High-speed Prolog Machine (HPM). [Citation Graph (0, 0)][DBLP ] ISCA, 1985, pp:191-197 [Conf ] Naohiko Heida , Yoshikazu Hasegawa , Yoshiki Mochizuki , Katsura Hirosawa , Akihiko Konagaya , Tetsuro Toyoda TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks. [Citation Graph (0, 0)][DBLP ] ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:152-160 [Conf ] Yukiko Fujiwara , Minoru Asogawa , Akihiko Konagaya Stochastic Motif Extraction Using Hidden Markov Model. [Citation Graph (0, 0)][DBLP ] ISMB, 1994, pp:121-129 [Conf ] Hidetoshi Tanaka , Masato Ishikawa , Kiyoshi Asai , Akihiko Konagaya Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. [Citation Graph (0, 0)][DBLP ] ISMB, 1993, pp:395-401 [Conf ] Akinobu Fukuzaki , Takeshi Nagashima , Kaori Ide , Fumikazu Konishi , Mariko Hatakeyama , Shigeyuki Yokoyama , Seiki Kuramitsu , Akihiko Konagaya Genome-Wide Functional Annotation Environment forin OBIGrid. [Citation Graph (0, 0)][DBLP ] LSGRID, 2004, pp:82-91 [Conf ] Fumikazu Konishi , Akihiko Konagaya The Architectural Design of High-Throughput BLAST Services on OBIGrid. [Citation Graph (0, 0)][DBLP ] LSGRID, 2004, pp:32-42 [Conf ] Kenji Satou , Yasuhiko Nakashima , Shin'ichi Tsuji , Xavier Défago , Akihiko Konagaya An Integrated System for Distributed Bioinformatics Environment on Grids. [Citation Graph (0, 0)][DBLP ] LSGRID, 2004, pp:8-19 [Conf ] Yohei Minakuchi , Kenji Satou , Akihiko Konagaya Prediction of Protein-Protein Interaction Sites Using Support Vector Machines. [Citation Graph (0, 0)][DBLP ] METMBS, 2003, pp:22-28 [Conf ] Shouji Tatsumoto , Kenji Satou , Akihiko Konagaya Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. [Citation Graph (0, 0)][DBLP ] METMBS, 2004, pp:250-255 [Conf ] Sumi Yoshikawa , Akihiko Konagaya DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug Interactions. [Citation Graph (0, 0)][DBLP ] METMBS, 2003, pp:231-236 [Conf ] Shouji Tatsumoto , Kenji Satou , Akihiko Konagaya , Jun'ichi Kurita , Hideto Shimahara , Shin-ichi Tate Development of Support Tool for NMR Spectrum Analysis. [Citation Graph (0, 0)][DBLP ] METMBS, 2003, pp:159-164 [Conf ] Akihiko Konagaya , Ryosei Nakazaki , Mamoru Umemura A Co-Operative Programming Environment for a Back-End Type Sequential Inference Machine CHI. [Citation Graph (0, 0)][DBLP ] Parallel Algorithms and Architectures, 1987, pp:196-205 [Conf ] Makoto Taiji , Tetsu Narumi , Yousuke Ohno , Akihiko Konagaya MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. [Citation Graph (0, 0)][DBLP ] PARCO, 2003, pp:669-676 [Conf ] Xavier Défago , Akihiko Konagaya Circle formation for oblivious anonymous mobile robots with no common sense of orientation. [Citation Graph (0, 0)][DBLP ] POMC, 2002, pp:97-104 [Conf ] Tsutomu Maruyama , Akihiko Konagaya , Koichi Konishi An Asynchronous Fine-Grained Parallel Genetic Algorithm. [Citation Graph (0, 0)][DBLP ] PPSN, 1992, pp:569-578 [Conf ] Yoshiki Yamaguchi , Tsutomu Maruyama , Akihiko Konagaya High Speed Homology Search with FPGAs. [Citation Graph (0, 0)][DBLP ] Pacific Symposium on Biocomputing, 2002, pp:271-282 [Conf ] Tetsuo Ida , Akihiko Konagaya Comparison of Closure Reduction and Combinatory Reduction Schemes. [Citation Graph (0, 0)][DBLP ] RIMS Symposia on Software Science and Engineering, 1984, pp:261-291 [Conf ] Makoto Taiji , Tetsu Narumi , Yousuke Ohno , Noriyuki Futatsugi , Atsushi Suenaga , Naoki Takada , Akihiko Konagaya Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations. [Citation Graph (0, 0)][DBLP ] SC, 2003, pp:15- [Conf ] Akihiko Konagaya , Shinichi Habata , Atsushi Atarashi , Minoru Yokota Performance Evaluation of a Sequential Inference Machine CHI. [Citation Graph (0, 0)][DBLP ] NACLP, 1989, pp:1165-1179 [Conf ] Akihiko Konagaya OBIGrid: Towards a New Distributed Platform for Bioinformatics. [Citation Graph (0, 0)][DBLP ] SRDS, 2002, pp:380-0 [Conf ] Shuhei Kimura , Kaori Ide , Aiko Kashihara , Makoto Kano , Mariko Hatakeyama , Ryoji Masui , Noriko Nakagawa , Shigeyuki Yokoyama , Seiki Kuramitsu , Akihiko Konagaya Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:7, pp:1154-1163 [Journal ] Shuhei Kimura , Takuji Kawasaki , Mariko Hatakeyama , Takashi Naka , Fumikazu Konishi , Akihiko Konagaya OBIYagns: a grid-based biochemical simulator with a parameter estimator. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:10, pp:1646-1648 [Journal ] Tetsuo Shibuya , Hisashi Kashima , Akihiko Konagaya Efficient filtering methods for clustering cDNAs with spliced sequence alignment. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2004, v:20, n:1, pp:29-39 [Journal ] Tetsuro Toyoda , Akihiko Konagaya KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2003, v:19, n:3, pp:433-434 [Journal ] Tetsuro Toyoda , Yoshiki Mochizuki , Akihiko Konagaya GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2003, v:19, n:3, pp:437-438 [Journal ] Shigeru Takasaki , Yoshihiro Kawamura , Akihiko Konagaya Selecting effective siRNA sequences based on the self-organizing map and statistical techniques. [Citation Graph (0, 0)][DBLP ] Computational Biology and Chemistry, 2006, v:30, n:3, pp:169-178 [Journal ] Eli Kaminuma , Naohiko Heida , Yuko Tsumoto , Miki Nakazawa , Nobuharu Goto , Akihiko Konagaya , Minami Matsui , Tetsuro Toyoda Three-dimensional Definition of Leaf Morphological Traits of arabidopsis in Silico Phenotypic Analysis. [Citation Graph (0, 0)][DBLP ] J. Bioinformatics and Computational Biology, 2005, v:3, n:2, pp:401-414 [Journal ] Kaoru Yamamoto , Taku Kudo , Akihiko Konagaya , Yuji Matsumoto Use of morphological analysis in protein name recognition. [Citation Graph (0, 0)][DBLP ] Journal of Biomedical Informatics, 2004, v:37, n:6, pp:471-482 [Journal ] Takeshi Nagashima , Hideo Matsuda , Diego G. Silva , Nikolai Petrovsky , Akihiko Konagaya , Christian Schönbach FREP: a database of functional repeats in mouse cDNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:471-475 [Journal ] Tetsuya Sakurai , Masakazu Satou , Kenji Akiyama , Kei Iida , Motoaki Seki , Takashi Kuromori , Takuya Ito , Akihiko Konagaya , Tetsuro Toyoda , Kazuo Shinozaki RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:647-650 [Journal ] Peter W. Arzberger , Abbas Farazdel , Akihiko Konagaya , Larry Ang , Shinji Shimojo , Rick L. Stevens Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science. [Citation Graph (0, 0)][DBLP ] New Generation Comput., 2004, v:22, n:2, pp:- [Journal ] Akihiko Konagaya , Fumikazu Konishi , Mariko Hatakeyama , Kenji Satou The Superstructure toward Open Bioinformatics Grid. [Citation Graph (0, 0)][DBLP ] New Generation Comput., 2004, v:22, n:2, pp:- [Journal ] Akihiko Konagaya , Mamoru Umemura Knowledge Information Processing Language: ShapeUp. [Citation Graph (0, 0)][DBLP ] New Generation Comput., 1984, v:2, n:2, pp:195-201 [Journal ] Yoshiki Yamaguchi , Tsutomu Maruyama , Ryuzo Azuma , Moritoshi Yasunaga , Akihiko Konagaya Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation. [Citation Graph (0, 0)][DBLP ] VLSI Signal Processing, 2007, v:48, n:3, pp:287-299 [Journal ] An FPGA Implementation of Multiple Sequence Alignment Based on Carrillo-Lipman Method. [Citation Graph (, )][DBLP ] High speed tablation system using an FPGA designed for distribution tables of frequent DNA subsequences. [Citation Graph (, )][DBLP ] Ontology-Driven Hypothetic Assertion (OHA) for Drug Interaction Prediction. [Citation Graph (, )][DBLP ] Inference of S-system models of genetic networks using a genetic local search. [Citation Graph (, )][DBLP ] Particle simulation approach for subcellular dynamics and interactions of biological molecules. [Citation Graph (, )][DBLP ] Selecting effective siRNA sequences by using radial basis function network and decision tree learning. [Citation Graph (, )][DBLP ] Trends in life science grid: from computing grid to knowledge grid. [Citation Graph (, )][DBLP ] Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation. [Citation Graph (, )][DBLP ] Search in 0.005secs, Finished in 0.422secs