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Veli Mäkinen: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Veli Mäkinen
    Trade Off Between Compression and Search Times in Compact Suffix Array. [Citation Graph (0, 0)][DBLP]
    ALENEX, 2001, pp:189-201 [Conf]
  2. Esko Ukkonen, Kjell Lemström, Veli Mäkinen
    Sweepline the Music! [Citation Graph (0, 0)][DBLP]
    Computer Science in Perspective, 2003, pp:330-342 [Conf]
  3. Kjell Lemström, Veli Mäkinen
    On Minimizing Pattern Splitting in Multi-track String Matching. [Citation Graph (0, 0)][DBLP]
    CPM, 2003, pp:237-253 [Conf]
  4. Veli Mäkinen
    Compact Suffix Array. [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:305-319 [Conf]
  5. Veli Mäkinen, Gonzalo Navarro
    Compressed Compact Suffix Arrays. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:420-433 [Conf]
  6. Veli Mäkinen, Gonzalo Navarro
    Succinct Suffix Arrays Based on Run-Length Encoding. [Citation Graph (0, 0)][DBLP]
    CPM, 2005, pp:45-56 [Conf]
  7. Veli Mäkinen, Gonzalo Navarro
    Dynamic Entropy-Compressed Sequences and Full-Text Indexes. [Citation Graph (0, 0)][DBLP]
    CPM, 2006, pp:306-317 [Conf]
  8. Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen
    Approximate Matching of Run-Length Compressed Strings. [Citation Graph (0, 0)][DBLP]
    CPM, 2001, pp:31-49 [Conf]
  9. Veli Mäkinen, Esko Ukkonen
    Local Similarity Based Point-Pattern Matching. [Citation Graph (0, 0)][DBLP]
    CPM, 2002, pp:115-132 [Conf]
  10. Sebastian Böcker, Veli Mäkinen
    Combinatorial Approaches for Mass Spectra Recalibration. [Citation Graph (0, 0)][DBLP]
    Computational Proteomics, 2005, pp:- [Conf]
  11. Veli Mäkinen, Gonzalo Navarro, Kunihiko Sadakane
    Advantages of Backward Searching - Efficient Secondary Memory and Distributed Implementation of Compressed Suffix Arrays. [Citation Graph (0, 0)][DBLP]
    ISAAC, 2004, pp:681-692 [Conf]
  12. Kjell Lemström, Veli Mäkinen, Anna Pienimäki, M. Turkia, Esko Ukkonen
    The C-BRAHMS project. [Citation Graph (0, 0)][DBLP]
    ISMIR, 2003, pp:- [Conf]
  13. Esko Ukkonen, Kjell Lemström, Veli Mäkinen
    Geometric algorithms for transposition invariant content based music retrieval. [Citation Graph (0, 0)][DBLP]
    ISMIR, 2003, pp:- [Conf]
  14. Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro
    Rotation and Lighting Invariant Template Matching. [Citation Graph (0, 0)][DBLP]
    LATIN, 2004, pp:39-48 [Conf]
  15. Veli Mäkinen, Gonzalo Navarro
    Position-Restricted Substring Searching. [Citation Graph (0, 0)][DBLP]
    LATIN, 2006, pp:703-714 [Conf]
  16. Szymon Grabowski, Veli Mäkinen, Gonzalo Navarro
    First Huffman, Then Burrows-Wheeler: A Simple Alphabet-Independent FM-Index. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2004, pp:210-211 [Conf]
  17. Paolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro
    An Alphabet-Friendly FM-Index. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2004, pp:150-160 [Conf]
  18. Veli Mäkinen
    Using Edit Distance in Point-Pattern Matching. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2001, pp:153-161 [Conf]
  19. Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen
    Algorithms for Transposition Invariant String Matching. [Citation Graph (0, 0)][DBLP]
    STACS, 2003, pp:191-202 [Conf]
  20. Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen
    Finding Missing Patterns. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:463-474 [Conf]
  21. Veli Mäkinen, Esko Ukkonen, Gonzalo Navarro
    Approximate Matching of Run-Length Compressed Strings. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 2003, v:35, n:4, pp:347-369 [Journal]
  22. Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen
    Compressed suffix tree - a basis for genome-scale sequence analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:5, pp:629-630 [Journal]
  23. Veli Mäkinen
    Compact Suffix Array -- A Space-Efficient Full-Text Index. [Citation Graph (0, 0)][DBLP]
    Fundam. Inform., 2003, v:56, n:1-2, pp:191-210 [Journal]
  24. Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro
    Flexible Music Retrieval in Sublinear Time. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 2006, v:17, n:6, pp:1345-1364 [Journal]
  25. Szymon Grabowski, Gonzalo Navarro, Rafal Przywarski, Alejandro Salinger, Veli Mäkinen
    A Simple Alphabet-independent Fm-index. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 2006, v:17, n:6, pp:1365-1384 [Journal]
  26. Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen
    Transposition invariant string matching. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 2005, v:56, n:2, pp:124-153 [Journal]
  27. Kjell Lemström, Veli Mäkinen
    On minimizing pattern splitting in multi-track string matching. [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2005, v:3, n:2-4, pp:248-266 [Journal]
  28. Veli Mäkinen, Gonzalo Navarro
    Succinct Suffix Arrays based on Run-Length Encoding. [Citation Graph (0, 0)][DBLP]
    Nord. J. Comput., 2005, v:12, n:1, pp:40-66 [Journal]
  29. Niko Välimäki, Veli Mäkinen
    Space-Efficient Algorithms for Document Retrieval. [Citation Graph (0, 0)][DBLP]
    CPM, 2007, pp:205-215 [Conf]
  30. Veli Mäkinen, Gonzalo Navarro
    Implicit Compression Boosting with Applications to Self-indexing. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2007, pp:229-241 [Conf]
  31. Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro
    Flexible music retrieval in sublinear time. [Citation Graph (0, 0)][DBLP]
    Stringology, 2005, pp:174-189 [Conf]
  32. Szymon Grabowski, Veli Mäkinen, Gonzalo Navarro, Alejandro Salinger
    A simple alphabet-independent FM-index. [Citation Graph (0, 0)][DBLP]
    Stringology, 2005, pp:231-245 [Conf]
  33. Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen
    Engineering a Compressed Suffix Tree Implementation. [Citation Graph (0, 0)][DBLP]
    WEA, 2007, pp:217-228 [Conf]
  34. Gonzalo Navarro, Veli Mäkinen
    Compressed full-text indexes. [Citation Graph (0, 0)][DBLP]
    ACM Comput. Surv., 2007, v:39, n:1, pp:- [Journal]
  35. Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro
    Rotation and lighting invariant template matching. [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 2007, v:205, n:7, pp:1096-1113 [Journal]
  36. Paolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro
    Compressed representations of sequences and full-text indexes. [Citation Graph (0, 0)][DBLP]
    ACM Transactions on Algorithms, 2007, v:3, n:2, pp:- [Journal]

  37. Unified View of Backward Backtracking in Short Read Mapping. [Citation Graph (, )][DBLP]


  38. An(other) Entropy-Bounded Compressed Suffix Tree. [Citation Graph (, )][DBLP]


  39. Approximate All-Pairs Suffix/Prefix Overlaps. [Citation Graph (, )][DBLP]


  40. On Self-Indexing Images - Image Compression with Added Value. [Citation Graph (, )][DBLP]


  41. Maximum line-pair stabbing problem and its variations. [Citation Graph (, )][DBLP]


  42. Fast in-memory XPath search using compressed indexes. [Citation Graph (, )][DBLP]


  43. Space Efficient String Mining under Frequency Constraints. [Citation Graph (, )][DBLP]


  44. Fast Index Based Filters for Music Retrieval. [Citation Graph (, )][DBLP]


  45. Storage and Retrieval of Individual Genomes. [Citation Graph (, )][DBLP]


  46. Run-Length Compressed Indexes Are Superior for Highly Repetitive Sequence Collections. [Citation Graph (, )][DBLP]


  47. Fast In-Memory XPath Search over Compressed Text and Tree Indexes [Citation Graph (, )][DBLP]


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