The SCEAS System
Navigation Menu

Search the dblp DataBase

Title:
Author:

Jens Stoye: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Klaus-Bernd Schürmann, Jens Stoye
    An Incomplex Algorithm for Fast Suffix Array Construction. [Citation Graph (0, 0)][DBLP]
    ALENEX/ANALCO, 2005, pp:78-85 [Conf]
  2. Anne Bergeron, Jens Stoye
    On the Similarity of Sets of Permutations and Its Applications to Genome Comparison. [Citation Graph (0, 0)][DBLP]
    COCOON, 2003, pp:68-79 [Conf]
  3. Constantin Bannert, Jens Stoye
    Protein Annotation by Secondary Structure Based Alignments (PASSTA). [Citation Graph (0, 0)][DBLP]
    CompLife, 2005, pp:79-90 [Conf]
  4. Anne Bergeron, Julia Mixtacki, Jens Stoye
    Reversal Distance without Hurdles and Fortresses. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:388-399 [Conf]
  5. Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
    Finding Maximal Pairs with Bounded Gap. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:134-149 [Conf]
  6. Steffen Heber, Jens Stoye
    Finding All Common Intervals of k Permutations. [Citation Graph (0, 0)][DBLP]
    CPM, 2001, pp:207-218 [Conf]
  7. Thomas Schmidt, Jens Stoye
    Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:347-358 [Conf]
  8. Jens Stoye, Dan Gusfield
    Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree (Preliminary Version). [Citation Graph (0, 0)][DBLP]
    CPM, 1998, pp:140-152 [Conf]
  9. Anne Bergeron, Steffen Heber, Jens Stoye
    Common intervals and sorting by reversals: a marriage of necessity. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:54-63 [Conf]
  10. Michael Sammeth, Burkhard Morgenstern, Jens Stoye
    Divide-and-conquer multiple alignment with segment-based constraints. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:189-195 [Conf]
  11. Constantin Bannert, Marc Rehmsmeier, Rainer Spang, Jens Stoye
    Sequence Database Search Using Jumping Alignments. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:142- [Conf]
  12. Constantin Bannert, Jens Stoye
    Evaluation of the Jumping Alignment algorithm with artificial and biological data. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:21-25 [Conf]
  13. Knut Reinert, Jens Stoye, Torsten Will
    Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:17-24 [Conf]
  14. Jens Stoye
    Index Structures for Large Sequence Data: Suffix Trees and Affix Trees. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung (Ergänzungsband), 2002, pp:67-71 [Conf]
  15. Mark Cieliebak, Thomas Erlebach, Zsuzsanna Lipták, Jens Stoye, Emo Welzl
    Algorithmic Complexity of Protein Identification: Searching in Weighted Strings. [Citation Graph (0, 0)][DBLP]
    IFIP TCS, 2002, pp:143-156 [Conf]
  16. Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Pühler, Forest Rohwer, Folker Meyer, Jens Stoye
    Finding novel genes in bacterial communities isolated from the environment. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:281-289 [Conf]
  17. Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich
    Computation and Visualization of Degenerate Repeats in Complete Genomes. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:228-238 [Conf]
  18. Rainer Spang, Marc Rehmsmeier, Jens Stoye
    Sequence Database Search Using Jumping Alignments. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:367-375 [Conf]
  19. Jens Stoye, Dirk Evers, Folker Meyer
    Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:303-306 [Conf]
  20. Anne Bergeron, Julia Mixtacki, Jens Stoye
    On Sorting by Translocations. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:615-629 [Conf]
  21. Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron
    Contig selection in physical mapping. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:155-164 [Conf]
  22. Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
    Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:189-203 [Conf]
  23. Klaus-Bernd Schürmann, Jens Stoye
    Counting Suffix Arrays and Strings. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2005, pp:55-66 [Conf]
  24. Morris Michael, Christoph Dieterich, Jens Stoye
    Suboptimal Local Alignments Across Multiple Scoring Schemes. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:99-110 [Conf]
  25. Anne Bergeron, Julia Mixtacki, Jens Stoye
    A Unifying View of Genome Rearrangements. [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:163-173 [Conf]
  26. Steffen Heber, Jens Stoye
    Algorithms for Finding Gene Clusters. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:252-263 [Conf]
  27. Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens Stoye
    Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:276-290 [Conf]
  28. Robert Giegerich, Stefan Kurtz, Jens Stoye
    Efficient Implementation of Lazy Suffix Trees. [Citation Graph (0, 0)][DBLP]
    Algorithm Engineering, 1999, pp:30-42 [Conf]
  29. Daniela Bartels, Sebastian Kespohl, Stefan Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster
    BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:853-859 [Journal]
  30. Knut Reinert, Jens Stoye, Torsten Will
    An iterative method for faster sum-of-pairs multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:9, pp:808-814 [Journal]
  31. Michael Sammeth, Thasso Griebel, Felix Tille, Jens Stoye
    Panta rhei (QAlign2): an open graphical environment for sequence analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:7, pp:889-890 [Journal]
  32. Michael Sammeth, Jörg Rothgänger, W. Esser, Jürgen Albert, Jens Stoye, Dag Harmsen
    Digital extractor: analysis of digital differential display output. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:12, pp:1592-1593 [Journal]
  33. Jens Stoye, Dirk Evers, Folker Meyer
    Rose: generating sequence families. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:2, pp:157-163 [Journal]
  34. Jens Stoye, Vincent Moulton, Andreas W. M. Dress
    DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:6, pp:625-626 [Journal]
  35. Antje Krause, Jens Stoye, Martin Vingron
    Large scale hierarchical clustering of protein sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:15- [Journal]
  36. Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen
    Benchmarking tools for the alignment of functional noncoding DNA. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:6- [Journal]
  37. Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen
    Correction: Benchmarking tools for the alignment of functional noncodingDNA. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:73- [Journal]
  38. Mark Cieliebak, Thomas Erlebach, Zsuzsanna Lipták, Jens Stoye, Emo Welzl
    Algorithmic complexity of protein identification: combinatorics of weighted strings. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:137, n:1, pp:27-46 [Journal]
  39. Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron
    Contig Selection in Physical Mapping. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:395-408 [Journal]
  40. Rainer Spang, Marc Rehmsmeier, Jens Stoye
    A Novel Approach to Remote Homology Detection: Jumping Alignments. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:5, pp:747-760 [Journal]
  41. Dan Gusfield, Jens Stoye
    Linear time algorithms for finding and representing all the tandem repeats in a string. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2004, v:69, n:4, pp:525-546 [Journal]
  42. Gilles Didier, Thomas Schmidt, Jens Stoye, Dekel Tsur
    Character sets of strings. [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2007, v:5, n:2, pp:330-340 [Journal]
  43. Gunnar Brinkmann, Andreas W. M. Dress, Sören Perrey, Jens Stoye
    Two applications of the Divide&Conquer principle in the molecular sciences. [Citation Graph (0, 0)][DBLP]
    Math. Program., 1997, v:79, n:, pp:71-97 [Journal]
  44. Antje Krause, Jens Stoye, Martin Vingron
    The SYSTERS protein sequence cluster set. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:270-272 [Journal]
  45. Robert Giegerich, Stefan Kurtz, Jens Stoye
    Efficient implementation of lazy suffix trees. [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 2003, v:33, n:11, pp:1035-1049 [Journal]
  46. Klaus-Bernd Schürmann, Jens Stoye
    An incomplex algorithm for fast suffix array construction. [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 2007, v:37, n:3, pp:309-329 [Journal]
  47. Michael Sammeth, Jens Stoye
    Comparing Tandem Repeats with Duplications and Excisions of Variable Degree. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:395-407 [Journal]
  48. Jens Stoye, Dan Gusfield
    Simple and flexible detection of contiguous repeats using a suffix tree. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2002, v:270, n:1-2, pp:843-856 [Journal]

  49. Indexing and Searching a Mass Spectrometry Database. [Citation Graph (, )][DBLP]


  50. HP Distance Via Double Cut and Join Distance. [Citation Graph (, )][DBLP]


  51. Computation of Median Gene Clusters. [Citation Graph (, )][DBLP]


  52. On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. [Citation Graph (, )][DBLP]


  53. Counting All DCJ Sorting Scenarios. [Citation Graph (, )][DBLP]


  54. Finding Nested Common Intervals Efficiently. [Citation Graph (, )][DBLP]


  55. Rearrangement Models and Single-Cut Operations. [Citation Graph (, )][DBLP]


  56. Detecting Repeat Families in Incompletely Sequenced Genomes. [Citation Graph (, )][DBLP]


  57. Phylogenetic Comparative Assembly. [Citation Graph (, )][DBLP]


  58. Swiftly Computing Center Strings. [Citation Graph (, )][DBLP]


  59. Genomic Distance with DCJ and Indels. [Citation Graph (, )][DBLP]


  60. MeltDB: a software platform for the analysis and integration of metabolomics experiment data. [Citation Graph (, )][DBLP]


  61. ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. [Citation Graph (, )][DBLP]


  62. A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). [Citation Graph (, )][DBLP]


  63. r2cat: synteny plots and comparative assembly. [Citation Graph (, )][DBLP]


  64. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. [Citation Graph (, )][DBLP]


  65. Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance [Citation Graph (, )][DBLP]


Search in 0.005secs, Finished in 0.008secs
NOTICE1
System may not be available sometimes or not working properly, since it is still in development with continuous upgrades
NOTICE2
The rankings that are presented on this page should NOT be considered as formal since the citation info is incomplete in DBLP
 
System created by asidirop@csd.auth.gr [http://users.auth.gr/~asidirop/] © 2002
for Data Engineering Laboratory, Department of Informatics, Aristotle University © 2002