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Alvis Brazma: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Alvis Brazma
    Efficient Identification of Regular Expressions from Representative Examples. [Citation Graph (1, 0)][DBLP]
    COLT, 1993, pp:236-242 [Conf]
  2. Alvis Brazma
    Efficient Algorithm for Learning Simple Regular Expressions from Noisy Examples. [Citation Graph (0, 0)][DBLP]
    AII/ALT, 1994, pp:260-271 [Conf]
  3. Alvis Brazma, Karlis Cerans
    Efficient Learning of Regular Expressions from Good Examples. [Citation Graph (0, 0)][DBLP]
    AII/ALT, 1994, pp:76-90 [Conf]
  4. Alvis Brazma
    Inductive Synthesis of Dot Expressions. [Citation Graph (0, 0)][DBLP]
    Baltic Computer Science, 1991, pp:156-212 [Conf]
  5. J. Rung, T. Schlitt, Alvis Brazma, K. Freivalds, Jaak Vilo
    Building and analysing genome-wide gene disruption networks. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:202-210 [Conf]
  6. Walter R. Gilks, Brian D. M. Tom, Alvis Brazma
    Fusing microarray experiments with multivariate regression. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:143- [Conf]
  7. Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo
    Correlating gene promoters and expression in gene disruption experiments. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:172-180 [Conf]
  8. Alvis Brazma
    Learning of regular expressions by pattern matching. [Citation Graph (0, 0)][DBLP]
    EuroCOLT, 1995, pp:392-403 [Conf]
  9. Alvis Brazma, Tomas P. Flores, Peter Maccallum, Alan Robinson
    Data Mining and Visualisation in Molecular Biology Databases. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:127- [Conf]
  10. Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
    Predicting gene regulatory elements from their expression data in the complete yeast genome. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  11. Alvis Brazma, Jaak Vilo, Esko Ukkonen
    Finding transcription factor binding site combinations in the yeast genome. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:57-59 [Conf]
  12. Karlis Kaugars, Juris Reinfelds, Alvis Brazma
    A Simple Algorithm for Drawing Large Graphs on Small Screens. [Citation Graph (0, 0)][DBLP]
    Graph Drawing, 1994, pp:278-281 [Conf]
  13. Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
    Pattern Discovery in Biosequences. [Citation Graph (0, 0)][DBLP]
    ICGI, 1998, pp:257-270 [Conf]
  14. Alvis Brazma, Esko Ukkonen, Jaak Vilo
    Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    ISAAC, 1996, pp:95-104 [Conf]
  15. Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo
    Discovering Patterns and Subfamilies in Biosequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:34-43 [Conf]
  16. Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen
    Data Mining for Regulatory Elements in Yeast Genome. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:65-74 [Conf]
  17. Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen
    Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:384-394 [Conf]
  18. Alvis Brazma
    Learning a Subclass of Regular Expressions by Recognizing Periodic Repetitions. [Citation Graph (0, 0)][DBLP]
    SCAI, 1993, pp:137-146 [Conf]
  19. Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush
    An open letter to the scientific journals. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:11, pp:1409- [Journal]
  20. Jonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma
    ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:6, pp:765-767 [Journal]
  21. Alvis Brazma
    On the Importance of Standardisation in Life Sciences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:113-114 [Journal]
  22. Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
    BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:16, pp:3439-3440 [Journal]
  23. Ugis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim Rayner, Alvis Brazma
    The ArrayExpress gene expression database: a software engineering and implementation perspective. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1495-1501 [Journal]
  24. Aurora Torrente, Misha Kapushesky, Alvis Brazma
    A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3993-3999 [Journal]
  25. Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David Gilbert
    Approaches to the Automatic Discovery of Patterns in Biosequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:2, pp:277-304 [Journal]
  26. Efim B. Kinber, Alvis Brazma
    Models of Inductive Synthesis. [Citation Graph (0, 0)][DBLP]
    J. Log. Program., 1990, v:9, n:2&3, pp:221-233 [Journal]
  27. Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone
    ArrayExpress - a public repository for microarray gene expression data at the EBI. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:68-71 [Journal]
  28. Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron
    The European Bioinformatics Institute's data resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:43-50 [Journal]
  29. Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma
    Expression Profiler: next generation - an online platform for analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:465-470 [Journal]
  30. Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, R. Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma
    ArrayExpress - a public repository for microarray gene expression data at the EBI. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:553-555 [Journal]
  31. Helen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, R. Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, Tim Rayner, Anjan Sharma, E. William, Ugis Sarkans, Alvis Brazma
    ArrayExpress - a public database of microarray experiments and gene expression profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:747-750 [Journal]
  32. Alvis Brazma, Karlis Cerans
    Noise-Tolerant Efficient Inductive Synthesis of Regular Expressions from Good Examples. [Citation Graph (0, 0)][DBLP]
    New Generation Comput., 1997, v:15, n:1, pp:105-140 [Journal]
  33. Alvis Brazma, Efim B. Kinber
    Generalized Regular Expressions-A Language for Synthesis of Programs with Braching in Loops. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1986, v:46, n:3, pp:175-195 [Journal]

  34. Preface. [Citation Graph (, )][DBLP]


  35. Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. [Citation Graph (, )][DBLP]


  36. The BREW workshop series: a stimulating experience in PhD education. [Citation Graph (, )][DBLP]


  37. Probabilistic retrieval and visualization of biologically relevant microarray experiments. [Citation Graph (, )][DBLP]


  38. Importing ArrayExpress datasets into R/Bioconductor. [Citation Graph (, )][DBLP]


  39. A System for Information Management in BioMedical Studies - SIMBioMS. [Citation Graph (, )][DBLP]


  40. Modeling sample variables with an Experimental Factor Ontology. [Citation Graph (, )][DBLP]


  41. PASSIM - an open source software system for managing information in biomedical studies. [Citation Graph (, )][DBLP]


  42. Current approaches to gene regulatory network modelling. [Citation Graph (, )][DBLP]


  43. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. [Citation Graph (, )][DBLP]


  44. Visualization of large microarray experiments with space maps. [Citation Graph (, )][DBLP]


  45. Probabilistic retrieval and visualization of biologically relevant microarray experiments. [Citation Graph (, )][DBLP]


  46. The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. [Citation Graph (, )][DBLP]


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