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Alex Bateman: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Alex Bateman, Daniel H. Haft
    HMM-based databases in InterPro. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:236-245 [Journal]
  2. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  3. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  4. Alex Bateman
    Bioinformatics - The new home for protein sequence motifs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:1, pp:2- [Journal]
  5. Alex Bateman, Matthew T. G. Holden, Corin Yeats
    The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1301-1303 [Journal]
  6. Alex Bateman, Alfonso Valencia
    New Leadership for Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:12, pp:1821- [Journal]
  7. Alex Bateman, Alfonso Valencia
    An update from the Bioinformatics Editors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:24, pp:4319- [Journal]
  8. Paul I. W. De Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, J. Shi, Hiroki Shirai, Tom L. Blundell
    HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:8, pp:748-749 [Journal]
  9. Robert D. Finn, Mhairi Marshall, Alex Bateman
    iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:3, pp:410-412 [Journal]
  10. Sam Griffiths-Jones, Alex Bateman
    The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:9, pp:1243-1249 [Journal]
  11. Kevin L. Howe, Alex Bateman, Richard Durbin
    QuickTree: building huge Neighbour-Joining trees of protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:11, pp:1546-1547 [Journal]
  12. Benjamin Schuster-Böckler, Alex Bateman
    Visualizing profile-profile alignment: pairwise HMM logos. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:12, pp:2912-2913 [Journal]
  13. Alfonso Valencia, Alex Bateman
    Increasing the Impact of Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:1, pp:1-1 [Journal]
  14. Alfonso Valencia, Alex Bateman
    Software patents in Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:12, pp:1415- [Journal]
  15. Alex Bateman, Alfonso Valencia
    Structural genomics meets computational biology. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:19, pp:2319- [Journal]
  16. Alfonso Valencia, Alex Bateman
    Editorial. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:133- [Journal]
  17. Alex Bateman, Robert D. Finn
    SCOOP: a simple method for identification of novel protein superfamily relationships. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:7, pp:809-814 [Journal]
  18. Alex Bateman
    The SGS3 protein involved in PTGS finds a family. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2002, v:3, n:, pp:21- [Journal]
  19. Alex Bateman, Valerie A. Kickhoefer
    The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:49- [Journal]
  20. Shane C. Dillon, Alex Bateman
    The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:109- [Journal]
  21. Lachlan Coin, Alex Bateman, Richard Durbin
    Enhanced protein domain discovery using taxonomy. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:56- [Journal]
  22. David J. Studholme, Neil D. Rawlings, Alan J. Barrett, Alex Bateman
    A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:17- [Journal]
  23. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  24. Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:276-280 [Journal]
  25. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer
    Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:260-262 [Journal]
  26. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:263-266 [Journal]
  27. Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy
    The Pfam protein families database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:138-141 [Journal]
  28. Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy
    Rfam: an RNA family database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:439-441 [Journal]
  29. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
    The InterPro Database, 2003 brings increased coverage and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:315-318 [Journal]
  30. Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin
    Pfam: multiple sequence alignments and HMM-profiles of protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:320-322 [Journal]
  31. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
    InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal]
  32. Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman
    Rfam: annotating non-coding RNAs in complete genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:121-124 [Journal]
  33. Alex Bateman
    Editorial. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:1- [Journal]
  34. Alex Bateman
    EDITORIAL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:1- [Journal]
  35. Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
    Pfam: clans, web tools and services. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:247-251 [Journal]
  36. Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright
    miRBase: microRNA sequences, targets and gene nomenclature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:140-144 [Journal]
  37. Alex Bateman
    Editorial. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:1-2 [Journal]
  38. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
    New developments in the InterPro database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:224-228 [Journal]

  39. Pfam 10 years on: 10 000 families and still growing. [Citation Graph (, )][DBLP]


  40. Databases, data tombs and dust in the wind. [Citation Graph (, )][DBLP]


  41. Cloud computing. [Citation Graph (, )][DBLP]


  42. Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. [Citation Graph (, )][DBLP]


  43. Editorial. [Citation Graph (, )][DBLP]


  44. Curators of the world unite: the International Society of Biocuration. [Citation Graph (, )][DBLP]


  45. Predicting active site residue annotations in the Pfam database. [Citation Graph (, )][DBLP]


  46. Reuse of structural domain-domain interactions in protein networks. [Citation Graph (, )][DBLP]


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