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Marco Pagni: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  2. Marco Pagni, C. Victor Jongeneel
    Making Sense of Score Statistics for Sequence Alignments. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2001, v:2, n:1, pp:51-67 [Journal]
  3. Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher
    PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:265-274 [Journal]
  4. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  5. Thomas Junier, Marco Pagni
    Dotlet: diagonal plots in a Web browser. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:2, pp:178-179 [Journal]
  6. Thomas Junier, Marco Pagni, Philipp Bucher
    mmsearch: a motif arrangement language and search program. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:12, pp:1234-1235 [Journal]
  7. Peter Sperisen, Marco Pagni
    JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:216- [Journal]
  8. Alexandre Gattiker, Karine Michoud, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Tania Lima, Paul Kersey, Marco Pagni, Christian J. A. Sigrist, Corinne Lachaize, Anne-Lise Veuthey, Elisabeth Gasteiger, Amos Bairoch
    Automated annotation of microbial proteomes in SWISS-PROT. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2003, v:27, n:1, pp:49-58 [Journal]
  9. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  10. Laurent Falquet, Lorenza Bordoli, Vassilios Ioannidis, Marco Pagni, C. Victor Jongeneel
    Swiss EMBnet node web server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3782-3783 [Journal]
  11. Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch
    The PROSITE database, its status in 2002. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:235-238 [Journal]
  12. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
    The InterPro Database, 2003 brings increased coverage and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:315-318 [Journal]
  13. Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, Laurent Falquet
    MyHits: a new interactive resource for protein annotation and domain identification. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:332-335 [Journal]
  14. Marco Pagni, Christian Iseli, Thomas Junier, Laurent Falquet, C. Victor Jongeneel, Philipp Bucher
    trEST, trGEN and Hits: access to databases of predicted protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:148-151 [Journal]
  15. Peter Sperisen, Christian Iseli, Marco Pagni, Brian J. Stevenson, Philipp Bucher, C. Victor Jongeneel
    trome, trEST and trGEN: databases of predicted protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:509-511 [Journal]
  16. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
    InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal]
  17. Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist
    The PROSITE database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:227-230 [Journal]
  18. Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet
    Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems. [Citation Graph (0, 0)][DBLP]
    e-Science, 2006, pp:58- [Conf]

  19. A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML. [Citation Graph (, )][DBLP]


  20. Experience using web services for biological sequence analysis. [Citation Graph (, )][DBLP]


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