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Publications of Author

1. Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
   ASIAN: a website for network inference. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2004, v:20, n:16, pp:2853-2856 [Journal]
   
2. Katsuhisa Horimoto, M. Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka
   A method for comparing circular genomes from gene locations: application to mitochondrial genomes. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1998, v:14, n:9, pp:789-802 [Journal]
   
3. Katsuhisa Horimoto, Hiroyuki Toh
   Statistical estimation of cluster boundaries in gene expression profile data. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:12, pp:1143-1151 [Journal]
   
4. Hiroyuki Toh
   Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm. [Citation Graph (0, 0)][DBLP]
   Computer Applications in the Biosciences, 1997, v:13, n:4, pp:387-396 [Journal]
   
5. Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
   The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:17, pp:3482-3489 [Journal]
   
6. Hiroyuki Toh, Katsuhisa Horimoto
   Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2002, v:18, n:2, pp:287-297 [Journal]
   
7. Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
   Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:20, pp:2488-2492 [Journal]
   
8. Kazutaka Katoh, Hiroyuki Toh
   PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2007, v:23, n:3, pp:372-374 [Journal]
   
9. Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
   GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2005, v:6, n:, pp:221- [Journal]
   
10. Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
    ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:659-664 [Journal]
    
11. Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
    Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. [Citation Graph (0, 0)][DBLP]
    Signal Processing, 2003, v:83, n:4, pp:777-788 [Journal]
    
12. Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
    Inference of Protein-Protein Interactions by Using Co-evolutionary Information. [Citation Graph (0, 0)][DBLP]
    AB, 2007, pp:322-333 [Conf]
    
13. 
    Recent developments in the MAFFT multiple sequence alignment program. [Citation Graph (, )][DBLP]
    
    
14. 
    SeSAW: balancing sequence and structural information in protein functional mapping. [Citation Graph (, )][DBLP]
    
    
15. 
    Parallelization of the MAFFT multiple sequence alignment program. [Citation Graph (, )][DBLP]
    
    
16. 
    ASH structure alignment package: Sensitivity and selectivity in domain classification. [Citation Graph (, )][DBLP]
    
    
17. 
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. [Citation Graph (, )][DBLP]