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Publications of Author

1. Mark Girolami, Rainer Breitling
   Biologically valid linear factor models of gene expression. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2004, v:20, n:17, pp:3021-3033 [Journal]
   
2. Julie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert
   A lock-and-key model for protein-protein interactions. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:16, pp:2012-2019 [Journal]
   
3. Fangxin Hong, Rainer Breitling, Connor W. McEntee, Ben S. Wittner, Jennifer L. Nemhauser, Joanne Chory
   RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:22, pp:2825-2827 [Journal]
   
4. Rainer Breitling, Patrick Armengaud, Anna Amtmann
   Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2005, v:6, n:, pp:181- [Journal]
   
5. Rainer Breitling, Anna Amtmann, Pawel Herzyk
   Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:34- [Journal]
   
6. Rainer Breitling, Anna Amtmann, Pawel Herzyk
   Graph-based iterative Group Analysis enhances microarray interpretation. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:100- [Journal]
   
7. Julie L. Morrison, Rainer Breitling, Desmond J. Higham, David R. Gilbert
   GeneRank: Using search engine technology for the analysis of microarray experiments. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2005, v:6, n:, pp:233- [Journal]
   
8. Ali Al-Shahib, Rainer Breitling, David Gilbert
   Franksum: new feature selection method for protein function prediction. [Citation Graph (0, 0)][DBLP]
   Int. J. Neural Syst., 2005, v:15, n:4, pp:259-275 [Journal]
   
9. Rainer Breitling, Pawel Herzyk
   Rank-based Methods as a Non-parametric Alternative of the T-statistic for the Analysis of Biological Microarray Data. [Citation Graph (0, 0)][DBLP]
   J. Bioinformatics and Computational Biology, 2005, v:3, n:5, pp:1171-1190 [Journal]
   
10. Simon Rogers, Mark Girolami, Colin Campbell, Rainer Breitling
    The Latent Process Decomposition of cDNA Microarray Data Sets. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:2, pp:143-156 [Journal]
    
11. Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers
    FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1161-1163 [Journal]
    
12. 
    Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning. [Citation Graph (, )][DBLP]
    
    
13. 
    Analysis of Tiling Microarray Data by Learning Vector Quantization and Relevance Learning. [Citation Graph (, )][DBLP]
    
    
14. 
    An Introduction to BioModel Engineering, Illustrated for Signal Transduction Pathways. [Citation Graph (, )][DBLP]
    
    
15. 
    A structured approach for the engineering of biochemical network models, illustrated for signalling pathways. [Citation Graph (, )][DBLP]
    
    
16. 
    MetaNetter: inference and visualization of high-resolution metabolomic networks. [Citation Graph (, )][DBLP]
    
    
17. 
    A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments. [Citation Graph (, )][DBLP]
    
    
18. 
    Probabilistic assignment of formulas to mass peaks in metabolomics experiments. [Citation Graph (, )][DBLP]
    
    
19. 
    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat. [Citation Graph (, )][DBLP]
    
    
20. 
    designGG: an R-package and web tool for the optimal design of genetical genomics experiments. [Citation Graph (, )][DBLP]