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Robert Giegerich: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Robert Giegerich, Carsten Meyer
    Algebraic Dynamic Programming. [Citation Graph (0, 0)][DBLP]
    AMAST, 2002, pp:349-364 [Conf]
  2. Robert Giegerich
    Explaining and Controlling Ambiguity in Dynamic Programming. [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:46-59 [Conf]
  3. Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz
    Local Similarity in RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:159-168 [Conf]
  4. Robert Giegerich
    Considerate Code Selection. [Citation Graph (0, 0)][DBLP]
    Code Generation, 1991, pp:51-65 [Conf]
  5. Robert Giegerich, Stefan Kurtz
    Suffix Trees in the Functional Programming Paradigm. [Citation Graph (0, 0)][DBLP]
    ESOP, 1994, pp:225-240 [Conf]
  6. Robert Giegerich, Karl Schmal
    Code Selection Techniques: Pattern Matching, Tree Parsing, and Inversion of Derivors. [Citation Graph (0, 0)][DBLP]
    ESOP, 1988, pp:247-268 [Conf]
  7. Michael Beckstette, Dirk Strothmann, R. Homann, Robert Giegerich, Stefan Kurtz
    PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2004, pp:53-64 [Conf]
  8. Dirk Evers, Robert Giegerich
    Reducing the Conformation Space in RNA Structure Prediction. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:118-124 [Conf]
  9. Dirk Evers, Robert Giegerich
    RNA Movies: Visualizing RNA secondary structure spaces. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:143- [Conf]
  10. Robert Giegerich, Christian Büschking
    Sequence Analysis with Distributed Resources: A WWW-Based Course. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:208- [Conf]
  11. Björn Voß, Robert Giegerich
    Prediction of conformational switching in RNA. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:173-178 [Conf]
  12. Robert Giegerich
    Towards A Discipline of Dynamic Programming. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung, 2002, pp:3-44 [Conf]
  13. Robert Giegerich, Dieter Lorenz
    ViSeL - An interactive course in DNA Sequencing. [Citation Graph (0, 0)][DBLP]
    Workshop Multimedia-Systeme, GI Jahrestagung, 1998, pp:53-65 [Conf]
  14. Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
    Invariance of Approximate Semantics with Respect to Program Transformations. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung, 1981, pp:1-10 [Conf]
  15. Robert Giegerich, Reinhard Wilhelm
    Implementierbarkeit attributierter Grammatiken. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung, 1977, pp:17-36 [Conf]
  16. Janina Reeder, Robert Giegerich
    A graphical programming system for molecular motif search. [Citation Graph (0, 0)][DBLP]
    GPCE, 2006, pp:131-140 [Conf]
  17. Henning Hermjakob, Robert Giegerich, Walter Arnold
    RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:131-139 [Conf]
  18. Robert Giegerich, Folker Meyer, Chris Schleiermacher
    GeneFisher-Software Support for the Detection of Postulated Genes. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:68-77 [Conf]
  19. Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich
    Computation and Visualization of Degenerate Repeats in Complete Genomes. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:228-238 [Conf]
  20. Robert Giegerich, Peter Steffen
    Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm. [Citation Graph (0, 0)][DBLP]
    MPC, 2002, pp:1-20 [Conf]
  21. Robert Giegerich
    Logic specification of code generation techniques. [Citation Graph (0, 0)][DBLP]
    Programs as Data Objects, 1985, pp:96-111 [Conf]
  22. Robert Giegerich, Willi Schepper
    Der Studiengang Naturwissenschaftliche Informatik an der Universität Bielefeld. [Citation Graph (0, 0)][DBLP]
    Physik und Informatik, 1991, pp:180-184 [Conf]
  23. Robert Giegerich
    On the Structure of Verifiable Code Generator Specifications. [Citation Graph (0, 0)][DBLP]
    PLDI, 1990, pp:1-8 [Conf]
  24. Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
    A New Strategy for Semantic Matching [Citation Graph (0, 0)][DBLP]
    PLILP, 1995, pp:81-96 [Conf]
  25. Robert Giegerich
    Automatic Generation of Machine Specific Code Optimizers. [Citation Graph (0, 0)][DBLP]
    POPL, 1982, pp:75-81 [Conf]
  26. Robert Giegerich
    A Formal Model of Instruction Set Semantics. [Citation Graph (0, 0)][DBLP]
    Fachtagung über Programmiersprachen, 1982, pp:177-190 [Conf]
  27. Robert Giegerich, Dirk Haase, Marc Rehmsmeier
    Prediction and Visualization of Structural Switches in RNA. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:126-137 [Conf]
  28. Robert Giegerich, Peter Steffen
    Challenges in the compilation of a domain specific language for dynamic programming. [Citation Graph (0, 0)][DBLP]
    SAC, 2006, pp:1603-1609 [Conf]
  29. Harald Ganzinger, Robert Giegerich
    Attribute coupled grammars. [Citation Graph (0, 0)][DBLP]
    SIGPLAN Symposium on Compiler Construction, 1984, pp:157-170 [Conf]
  30. Harald Ganzinger, Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
    A Truly Generative Semantics-Directed Compiler Generator. [Citation Graph (0, 0)][DBLP]
    SIGPLAN Symposium on Compiler Construction, 1982, pp:172-184 [Conf]
  31. Robert Giegerich, Stefan Kurtz, Jens Stoye
    Efficient Implementation of Lazy Suffix Trees. [Citation Graph (0, 0)][DBLP]
    Algorithm Engineering, 1999, pp:30-42 [Conf]
  32. Robert Giegerich
    Composition and Evaluation of Attribute Coupled Grammars. [Citation Graph (0, 0)][DBLP]
    Acta Inf., 1988, v:25, n:4, pp:355-423 [Journal]
  33. Robert Giegerich, Stefan Kurtz
    From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1997, v:19, n:3, pp:331-353 [Journal]
  34. Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich
    GenAlyzer: interactive visualization of sequence similarities between entire genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:12, pp:1964-1965 [Journal]
  35. Dirk Evers, Robert Giegerich
    RNA movies: visualizing RNA secondary structure spaces. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:1, pp:32-37 [Journal]
  36. Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich
    Minimum conflict: a divide-and-conquer approach to phylogeny estimation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:12, pp:1168-1178 [Journal]
  37. Wolfgang Gerlach, Robert Giegerich
    GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:6, pp:762-764 [Journal]
  38. Robert Giegerich
    A systematic approach to dynamic programming in bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:8, pp:665-677 [Journal]
  39. Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
    PathFinder: reconstruction and dynamic visualization of metabolic pathways. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:1, pp:124-129 [Journal]
  40. Jens Reeder, Robert Giegerich
    Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:17, pp:3516-3523 [Journal]
  41. Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich
    RNAshapes: an integrated RNA analysis package based on abstract shapes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:4, pp:500-503 [Journal]
  42. Björn Voss, Carsten Meyer, Robert Giegerich
    Evaluating the predictability of conformational switching in RNA. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:10, pp:1573-1582 [Journal]
  43. Paul P. Gardner, Robert Giegerich
    A comprehensive comparison of comparative RNA structure prediction approaches. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:140- [Journal]
  44. Jens Reeder, Robert Giegerich
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:104- [Journal]
  45. Janina Reeder, Peter Steffen, Robert Giegerich
    Effective ambiguity checking in biosequence analysis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:153- [Journal]
  46. Peter Steffen, Robert Giegerich
    Versatile and declarative dynamic programming using pair algebras. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:224- [Journal]
  47. Peter Steffen, Robert Giegerich
    Correction: versatile and declarative dynamic programming using pair algebras. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:214- [Journal]
  48. Harald Ganzinger, Robert Giegerich
    A note on termination in combinatiosn of heterogeneous term rewriting systems. [Citation Graph (0, 0)][DBLP]
    Bulletin of the EATCS, 1987, v:31, n:, pp:22-27 [Journal]
  49. Robert Giegerich, Enno Ohlebusch
    An Implicit Representation of Infinite Sequences of Terms. [Citation Graph (0, 0)][DBLP]
    Bulletin of the EATCS, 1991, v:43, n:, pp:174-182 [Journal]
  50. Peter Steffen, Robert Giegerich
    Table design in dynamic programming. [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 2006, v:204, n:9, pp:1325-1345 [Journal]
  51. Robert Giegerich, Reinhard Wilhelm
    Counter-One-Pass Features in One-Pass Compilation: A Formalization Using Attribute Grammars. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1978, v:7, n:6, pp:279-284 [Journal]
  52. Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
    Semantic Matching for Left-Linear Convergent Rewrite Systems [Citation Graph (0, 0)][DBLP]
    Journal of Functional and Logic Programming, 1999, v:1999, n:11, pp:- [Journal]
  53. Ketil Malde, Robert Giegerich
    Calculating PSSM probabilities with lazy dynamic programming. [Citation Graph (0, 0)][DBLP]
    J. Funct. Program., 2006, v:16, n:1, pp:75-81 [Journal]
  54. Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich
    e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:301-304 [Journal]
  55. Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich
    RNA-related tools on the Bielefeld Bioinformatics Server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3767-3770 [Journal]
  56. Robert Giegerich, Stefan Kurtz
    A Comparison of Imperative and Purely Functional Suffix Tree Constructions. [Citation Graph (0, 0)][DBLP]
    Sci. Comput. Program., 1995, v:25, n:2-3, pp:187-218 [Journal]
  57. Robert Giegerich, Carsten Meyer, Peter Steffen
    A discipline of dynamic programming over sequence data. [Citation Graph (0, 0)][DBLP]
    Sci. Comput. Program., 2004, v:51, n:3, pp:215-263 [Journal]
  58. Robert Giegerich, Stefan Kurtz, Jens Stoye
    Efficient implementation of lazy suffix trees. [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 2003, v:33, n:11, pp:1035-1049 [Journal]
  59. Matthias Höchsmann, Björn Voss, Robert Giegerich
    Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:1, pp:53-62 [Journal]
  60. Robert Giegerich
    Code Selection by Inversion of Order-Sorted Derivors. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1990, v:73, n:2, pp:177-211 [Journal]
  61. Robert Giegerich
    A Formal Framework for the Derivation of Machine-Specific Optimizers. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Program. Lang. Syst., 1983, v:5, n:3, pp:478-498 [Journal]
  62. Claus Brabrand, Robert Giegerich, Anders Møller
    Analyzing Ambiguity of Context-Free Grammars. [Citation Graph (0, 0)][DBLP]
    CIAA, 2007, pp:214-225 [Conf]

  63. Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach. [Citation Graph (, )][DBLP]


  64. Locomotif: from graphical motif description to RNA motif search. [Citation Graph (, )][DBLP]


  65. GPU Parallelization of Algebraic Dynamic Programming. [Citation Graph (, )][DBLP]


  66. Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. [Citation Graph (, )][DBLP]


  67. The BREW workshop series: a stimulating experience in PhD education. [Citation Graph (, )][DBLP]


  68. Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. [Citation Graph (, )][DBLP]


  69. mkESA: enhanced suffix array construction tool. [Citation Graph (, )][DBLP]


  70. Significant speedup of database searches with HMMs by search space reduction with PSSM family models. [Citation Graph (, )][DBLP]


  71. Faster computation of exact RNA shape probabilities. [Citation Graph (, )][DBLP]


  72. Efficient computation of absent words in genomic sequences. [Citation Graph (, )][DBLP]


  73. Shape based indexing for faster search of RNA family databases. [Citation Graph (, )][DBLP]


  74. GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. [Citation Graph (, )][DBLP]


  75. XML schemas for common bioinformatic data types and their application in workflow systems. [Citation Graph (, )][DBLP]


  76. Fast index based algorithms and software for matching position specific scoring matrices. [Citation Graph (, )][DBLP]


  77. Fine-tuning structural RNA alignments in the twilight zone. [Citation Graph (, )][DBLP]


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