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Allegra Via: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Allegra Via, Andreas Zanzoni, Manuela Helmer-Citterich
    Seq2Struct: a resource for establishing sequence-structure links. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:4, pp:551-553 [Journal]
  2. E. Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich
    A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:19, pp:2333-2339 [Journal]
  3. Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Küster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J. Gibson
    Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:79- [Journal]
  4. Allegra Via, Manuela Helmer-Citterich
    A structural study for the optimisation of functional motifs encoded in protein sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:50- [Journal]
  5. Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson
    ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3625-3630 [Journal]
  6. Gabriele Ausiello, Andreas Zanzoni, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich
    pdbFun: mass selection and fast comparison of annotated PDB residues. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:133-137 [Journal]
  7. Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich
    Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:229-231 [Journal]

  8. False occurrences of functional motifs in protein sequences highlight evolutionary constraints. [Citation Graph (, )][DBLP]


  9. Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites. [Citation Graph (, )][DBLP]


  10. FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. [Citation Graph (, )][DBLP]


  11. Query3d: a new method for high-throughput analysis of functional residues in protein structures. [Citation Graph (, )][DBLP]


  12. A neural strategy for the inference of SH3 domain-peptide interaction specificity. [Citation Graph (, )][DBLP]


  13. A structure filter for the Eukaryotic Linear Motif Resource. [Citation Graph (, )][DBLP]


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