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Kenta Nakai: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Paul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai
    Protein Subcellular Localisation Prediction with WoLF PSORT. [Citation Graph (0, 0)][DBLP]
    APBC, 2006, pp:39-48 [Conf]
  2. Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano
    Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance. [Citation Graph (0, 0)][DBLP]
    Discovery Science, 2004, pp:32-46 [Conf]
  3. Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
    Views: Fundamental Building Blocks in the Process of Knowledge Discovery. [Citation Graph (0, 0)][DBLP]
    FLAIRS Conference, 2001, pp:233-238 [Conf]
  4. Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano
    Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:101-108 [Conf]
  5. Paul Horton, Kenta Nakai
    A Probabilistic Classification System for Predicting the Cellular Localization Sites of Proteins. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:109-115 [Conf]
  6. Paul Horton, Kenta Nakai
    Better Prediction of Protein Cellular Localization Sites with the it k Nearest Neighbors Classifier. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:147-152 [Conf]
  7. Tetsushi Yada, Yasushi Totoki, Takahiro Ishii, Kenta Nakai
    Functional Prediction of B. subtilis Genes from Their Regulatory Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:354-357 [Conf]
  8. Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai
    Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  9. Sascha Ott, Yoshinori Tamada, Hideo Bannai, Kenta Nakai, Satoru Miyano
    Intrasplicing - Analysis of Long Intron Sequences. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:339-350 [Conf]
  10. Natalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai
    Parameter Landscape Analysis for Common Motif Discovery Programs. [Citation Graph (0, 0)][DBLP]
    Regulatory Genomics, 2004, pp:79-87 [Conf]
  11. Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano
    Finding Optimal Pairs of Patterns. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:450-462 [Conf]
  12. Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
    Extensive feature detection of N-terminal protein sorting signals. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:298-305 [Journal]
  13. Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai
    ORI-GENE: gene classification based on the evolutionary tree. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:167-173 [Journal]
  14. Kenta Nakai, T. Tokimori, A. Ogiwara, I. Uchiyama, T. Niiyama
    Gnome - an Internet-based sequence analysis tool. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:5, pp:547-550 [Journal]
  15. Natalia V. Poluliakh, Toshihisa Takagi, Kenta Nakai
    MELINA: motif extraction from promoter regions of potentially co-regulated genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:3, pp:423-424 [Journal]
  16. Tetsushi Yada, Mitsuteru Nakao, Yasushi Totoki, Kenta Nakai
    Modeling and predicting transcriptional units of <$O_SSF>Escherichia coli<$C_SSF>genes using hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:12, pp:987-993 [Journal]
  17. Tetsushi Yada, Yasushi Totoki, Masato Ishikawa, Kiyoshi Asai, Kenta Nakai
    Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:4, pp:317-325 [Journal]
  18. Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano
    Large-scale collection and characterization of promoters of human and mouse genes. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:4, n:, pp:- [Journal]
  19. Jennifer L. Gardy, Cory Spencer, Ke Wang, Martin Ester, Gábor E. Tusnády, István Simon, Sujun Hua, Katalin de Fays, Christophe G. Lambert, Kenta Nakai, Fiona S. L. Brinkman
    PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3613-3617 [Journal]
  20. Takahiro Ishii, Ken-ichi Yoshida, Goro Terai, Yasutaro Fujita, Kenta Nakai
    DBTBS: a database of Bacillus subtilis promoters and transcription factors. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:278-280 [Journal]
  21. Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai
    BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:75-77 [Journal]
  22. Yutaka Suzuki, Riu Yamashita, Kenta Nakai, Sumio Sugano
    DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:328-331 [Journal]
  23. Yutaka Suzuki, Riu Yamashita, Sumio Sugano, Kenta Nakai
    BTSS, DataBase of Transcriptional Start Sites: progress report 2004. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:78-81 [Journal]
  24. Kikuya Kato, Riu Yamashita, Ryo Matoba, Morito Monden, Shinzaburo Noguchi, Toshihisa Takagi, Kenta Nakai
    Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:533-536 [Journal]
  25. Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, Sumio Sugano
    DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:86-89 [Journal]
  26. Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    DBTGR: a database of tunicate promoters and their regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:552-555 [Journal]
  27. Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:863-869 [Journal]
  28. Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano
    An O(N2) Algorithm for Discovering Optimal Boolean Pattern Pairs. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:4, pp:159-170 [Journal]

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