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Akinori Sarai: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
    Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. [Citation Graph (0, 0)][DBLP]
    APBC, 2006, pp:227-236 [Conf]
  2. Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
    Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. [Citation Graph (0, 0)][DBLP]
    APBC, 2004, pp:233-238 [Conf]
  3. Akinori Sarai
    Methods for Predicting Target Sites of Transcription Factors. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:57-58 [Conf]
  4. Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
    RVP-net: online prediction of real valued accessible surface area of proteins from single sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:14, pp:1849-1851 [Journal]
  5. Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
    Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:4, pp:- [Journal]
  6. Jianghong An, T. Nakama, Y. Kubota, Akinori Sarai
    3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:2, pp:188-195 [Journal]
  7. Alexey V. Kochetov, Akinori Sarai
    Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:4, pp:- [Journal]
  8. Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai
    ORI-GENE: gene classification based on the evolutionary tree. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:167-173 [Journal]
  9. Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
    Thermodynamic database for protein-nucleic acid interactions (ProNIT). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:11, pp:1027-1034 [Journal]
  10. Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, Akinori Sarai
    ASAView: Database and tool for solvent accessibility representation in proteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:51- [Journal]
  11. Shandar Ahmad, Akinori Sarai
    PSSM-based prediction of DNA binding sites in proteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:33- [Journal]
  12. Marcos J. Araúzo-Bravo, Shandar Ahmad, Akinori Sarai
    Dimensionality of amino acid space and solvent accessibility prediction with neural networks. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2006, v:30, n:2, pp:160-168 [Journal]
  13. Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
    Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:1, pp:169-183 [Journal]
  14. Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai
    Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2000, v:21, n:11, pp:954-962 [Journal]
  15. Shandar Ahmad, Akinori Sarai
    Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:104-107 [Journal]
  16. K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai
    ProTherm, version 4.0: thermodynamic database for proteins and mutants. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:120-121 [Journal]
  17. M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai
    ProTherm, version 2.0: thermodynamic database for proteins and mutants. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:283-285 [Journal]
  18. M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai
    ProTherm: Thermodynamic Database for Proteins and Mutants. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:286-288 [Journal]
  19. M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, Akinori Sarai
    ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:301-302 [Journal]
  20. Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
    ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:284-287 [Journal]
  21. Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai
    rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:312-316 [Journal]
  22. Goran Neshich, Luiz C. Borro, Roberto H. Higa, Paula R. Kuser, Michel E. B. Yamagishi, Eduardo H. Franco, João N. Krauchenco, Renato Fileto, André A. Ribeiro, George B. P. Bezerra, Thiago M. Velludo, Tomás S. Jimenez, Noboru Furukawa, Hirofumi Teshima, Koji Kitajima, K. Abdulla Bava, Akinori Sarai, Roberto C. Togawa, Adauto L. Mancini
    The Diamond STING server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:29-35 [Journal]
  23. Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
    ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:124-127 [Journal]
  24. M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, Akinori Sarai
    ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:204-206 [Journal]

  25. Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines. [Citation Graph (, )][DBLP]


  26. AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. [Citation Graph (, )][DBLP]


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