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Philip E. Bourne: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Philip E. Bourne
    The Future of Bioinformatics. [Citation Graph (0, 0)][DBLP]
    APBC, 2004, pp:3- [Conf]
  2. Philip E. Bourne
    High Performance Computational Biology - Past Progress and Future Promise. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:13- [Conf]
  3. Werner G. Krebs, Philip E. Bourne
    Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:180-189 [Conf]
  4. Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov
    Building an automated classification of DNA-binding protein domains. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:192-201 [Conf]
  5. Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne
    Design and use of a software framework to obtain information derived from macromolecular structure data. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1995, pp:207-216 [Conf]
  6. Philip E. Bourne, Søren Brunak
    ISMB 2006. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:1-2 [Conf]
  7. Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
    Design and Application of a C++ Macromolecular Class Library. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:70-77 [Conf]
  8. John Biggs, Calton Pu, Philip E. Bourne
    Code Generation through Annotation of Macromolecular Structure Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:52-55 [Conf]
  9. Adam Birnbaum, James Hayes, Wilfred W. Li, Mark A. Miller, Peter W. Arzberger, Philip E. Bourne, Henri Casanova
    Grid Workflow Software for a High-Throughput Proteome Annotation Pipeline. [Citation Graph (0, 0)][DBLP]
    LSGRID, 2004, pp:68-81 [Conf]
  10. Atif Shahab, Danny Chuon, Toyotaro Suzumura, Wilfred W. Li, Robert W. Byrnes, Kouji Tanaka, Larry Ang, Satoshi Matsuoka, Philip E. Bourne, Mark A. Miller, Peter W. Arzberger
    Grid Portal Interface for Interactive Use and Monitoring of High-Throughput Proteome Annotation. [Citation Graph (0, 0)][DBLP]
    LSGRID, 2004, pp:53-67 [Conf]
  11. Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
    Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR. [Citation Graph (0, 0)][DBLP]
    PARCO, 2003, pp:661-668 [Conf]
  12. Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney
    Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  13. Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
    The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:375-386 [Conf]
  14. Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
    A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:275-286 [Conf]
  15. Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt
    Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:372-374 [Conf]
  16. Greg B. Quinn, H.-P. Wang, D. Martinez, Philip E. Bourne
    Developing Protein Documentaries and Other Multimedia Presentations for Molecular Biology. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:380-391 [Conf]
  17. Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Soren Buus, Ward Fleri, R. Kubo, O. Lund, D. Nemazee, Julia V. Ponomarenko, M. Sathiamurthy, S. Stewart, S. Way, S. S. Wilson, Björn Peters
    The Immune Epitope Database and Analysis Resource. [Citation Graph (0, 0)][DBLP]
    PRIB, 2006, pp:126-132 [Conf]
  18. Philip E. Bourne, John D. Westbrook, Helen M. Berman
    The Protein Data Bank and lessons in data management. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2004, v:5, n:1, pp:23-30 [Journal]
  19. Philip E. Bourne, Michael Gribskov
    ISMB-2000: Bioinformatics enters a new millennium. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:9, pp:749- [Journal]
  20. Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
    Design and application of PDBlib, a C++ macromolecular class library. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:6, pp:575-586 [Journal]
  21. Douglas S. Greer, John D. Westbrook, Philip E. Bourne
    An ontology driven architecture for derived representations of macromolecular structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:9, pp:1280-1281 [Journal]
  22. Werner G. Krebs, Philip E. Bourne
    Statistically rigorous automated protein annotation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:7, pp:1066-1073 [Journal]
  23. Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
    A case study of high-throughput biological data processing on parallel platforms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:12, pp:1940-1947 [Journal]
  24. Ilya N. Shindyalov, Philip E. Bourne
    Protein data representation and query using optimized data decomposition. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:5, pp:487-496 [Journal]
  25. Helge Weissig, Philip E. Bourne
    An analysis of the Protein Data Bank in search of temporal and global trends. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:10, pp:807-831 [Journal]
  26. John D. Westbrook, Philip E. Bourne
    STAR/mmCIF: An ontology for macromolecular structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:2, pp:159-168 [Journal]
  27. Peng Yang, Paul A. Craig, David Goodsell, Philip E. Bourne
    BioEditor - Simplifying Macromolecular Structure Annotation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:7, pp:897-898 [Journal]
  28. P. Zhang, E. A. Schon, S. G. Fischer, E. Cayanis, J. Weiss, S. Kistler, Philip E. Bourne
    An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:3, pp:309-317 [Journal]
  29. Apostol Gramada, Philip E. Bourne
    Multipolar representation of protein structure. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:242- [Journal]
  30. John L. Moreland, Apostol Gramada, Oleksandr V. Buzko, Qing Zhang, Philip E. Bourne
    The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:21- [Journal]
  31. Werner G. Krebs, Philip E. Bourne
    Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2004, v:2, n:1, pp:61-76 [Journal]
  32. Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne
    A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:5, pp:787-799 [Journal]
  33. Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne
    The Protein Data Bank. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:235-242 [Journal]
  34. T. N. Bhat, Philip E. Bourne, Zukang Feng, Gary Gilliland, Shri Jain, Veerasamy Ravichandran, Bohdan Schneider, Kata Schneider, Narmada Thanki, Helge Weissig, John D. Westbrook, Helen M. Berman
    The PDB data uniformity project. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:214-218 [Journal]
  35. Philip E. Bourne, Kenneth J. Addess, Wolfgang Bluhm, Li Chen, Nita Deshpande, Zukang Feng, Ward Fleri, Rachel Green, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Helge Weissig, John D. Westbrook, Helen M. Berman
    The distribution and query systems of the RCSB Protein Data Bank. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:223-225 [Journal]
  36. Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
    CE-MC: a multiple protein structure alignment server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:100-103 [Journal]
  37. Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne
    CKAAPs DB: a Conserved Key Amino Acid Positions DataBase. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:409-411 [Journal]
  38. Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, Philip E. Bourne
    CKAAPs DB: a conserved key amino acid positions database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:329-331 [Journal]
  39. Ilya N. Shindyalov, Philip E. Bourne
    A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:228-229 [Journal]
  40. John D. Westbrook, Zukang Feng, Shri Jain, T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne, Helen M. Berman
    The Protein Data Bank: unifying the archive. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:245-248 [Journal]
  41. Nita Deshpande, Kenneth J. Addess, Wolfgang Bluhm, Jeffrey C. Merino-Ott, Wayne Townsend-Merino, Qing Zhang, Charlie Knezevich, Lie Xie, Li Chen, Zukang Feng, Rachel Kramer Green, Judith L. Flippen-Anderson, John D. Westbrook, Helen M. Berman, Philip E. Bourne
    The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:233-237 [Journal]
  42. Andrei Kouranov, Lei Xie, Joanna de la Cruz, Li Chen, John D. Westbrook, Philip E. Bourne, Helen M. Berman
    The RCSB PDB information portal for structural genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:302-305 [Journal]
  43. Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne
    The Encyclopedia of Life Project: Grid Software and Deployment. [Citation Graph (0, 0)][DBLP]
    New Generation Comput., 2004, v:22, n:2, pp:- [Journal]

  44. Session Introduction. [Citation Graph (, )][DBLP]


  45. Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. [Citation Graph (, )][DBLP]


  46. Con-Struct Map: a comparative contact map analysis tool. [Citation Graph (, )][DBLP]


  47. A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery. [Citation Graph (, )][DBLP]


  48. Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2. [Citation Graph (, )][DBLP]


  49. High-throughput identification of interacting protein-protein binding sites. [Citation Graph (, )][DBLP]


  50. ElliPro: a new structure-based tool for the prediction of antibody epitopes. [Citation Graph (, )][DBLP]


  51. A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites. [Citation Graph (, )][DBLP]


  52. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. [Citation Graph (, )][DBLP]


  53. Curation of complex, context-dependent immunological data. [Citation Graph (, )][DBLP]


  54. Integration of open access literature into the RCSB Protein Data Bank using BioLit. [Citation Graph (, )][DBLP]


  55. dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment. [Citation Graph (, )][DBLP]


  56. Word add-in for ontology recognition: semantic enrichment of scientific literature. [Citation Graph (, )][DBLP]


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