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Marie-France Sagot :
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Alexandra M. Carvalho , Ana T. Freitas , Arlindo L. Oliveira , Marie-France Sagot A highly scalable algorithm for the extraction of CIS-regulatory regions. [Citation Graph (0, 0)][DBLP ] APBC, 2005, pp:273-282 [Conf ] Marie-France Sagot , Eric Tannier Perfect Sorting by Reversals. [Citation Graph (0, 0)][DBLP ] COCOON, 2005, pp:42-51 [Conf ] Marie-France Sagot , Alain Viari A Double Combinatorial Approach to Discovering Patterns in Biological Sequences. [Citation Graph (0, 0)][DBLP ] CPM, 1996, pp:186-208 [Conf ] Marie-France Sagot , Alain Viari Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices. [Citation Graph (0, 0)][DBLP ] CPM, 1997, pp:224-246 [Conf ] Marie-France Sagot , Alain Viari , Henry Soldano Multiple Sequence Comparison: A Peptide Matching Approach. [Citation Graph (0, 0)][DBLP ] CPM, 1995, pp:366-385 [Conf ] Eric Tannier , Marie-France Sagot Sorting by Reversals in Subquadratic Time. [Citation Graph (0, 0)][DBLP ] CPM, 2004, pp:1-13 [Conf ] Marie-France Sagot , Alain Viari , Henry Soldano A Distance-Based Block Searching Algorithm. [Citation Graph (0, 0)][DBLP ] ISMB, 1995, pp:322-331 [Conf ] Emilios Cambouropoulos , Maxime Crochemore , Costas S. Iliopoulos , Manal Mohamed , Marie-France Sagot A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories. [Citation Graph (0, 0)][DBLP ] ISMIR, 2005, pp:167-174 [Conf ] Maxime Crochemore , Costas S. Iliopoulos , Manal Mohamed , Marie-France Sagot Longest Repeats with a Block of Don't Cares. [Citation Graph (0, 0)][DBLP ] LATIN, 2004, pp:271-278 [Conf ] Nadia Pisanti , Alexandra M. Carvalho , Laurent Marsan , Marie-France Sagot RISOTTO: Fast Extraction of Motifs with Mismatches. [Citation Graph (0, 0)][DBLP ] LATIN, 2006, pp:757-768 [Conf ] Marie-France Sagot Spelling Approximate Repeated or Common Motifs Using a Suffix Tree. [Citation Graph (0, 0)][DBLP ] LATIN, 1998, pp:374-390 [Conf ] Nadia Pisanti , Maxime Crochemore , Roberto Grossi , Marie-France Sagot A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum. [Citation Graph (0, 0)][DBLP ] MFCS, 2003, pp:622-631 [Conf ] Estela Maris Rodrigues , Marie-France Sagot , Yoshiko Wakabayashi Some Approximation Results for the Maximum Agreement Forest Problem. [Citation Graph (0, 0)][DBLP ] RANDOM-APPROX, 2001, pp:159-169 [Conf ] Laurent Marsan , Marie-France Sagot Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. [Citation Graph (0, 0)][DBLP ] RECOMB, 2000, pp:210-219 [Conf ] Marie-France Sagot , Eugene W. Myers Identifying satellites in nucleic acid sequences. [Citation Graph (0, 0)][DBLP ] RECOMB, 1998, pp:234-242 [Conf ] Alexandra M. Carvalho , Arlindo L. Oliveira , Ana T. Freitas , Marie-France Sagot A parallel algorithm for the extraction of structured motifs. [Citation Graph (0, 0)][DBLP ] SAC, 2004, pp:147-153 [Conf ] Julien Allali , Marie-France Sagot A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. [Citation Graph (0, 0)][DBLP ] SPIRE, 2005, pp:348-359 [Conf ] Maxime Crochemore , Raffaele Giancarlo , Marie-France Sagot Longest Motifs with a Functionally Equivalent Central Block. [Citation Graph (0, 0)][DBLP ] SPIRE, 2004, pp:298-209 [Conf ] Alexandra M. Carvalho , Ana T. Freitas , Arlindo L. Oliveira , Marie-France Sagot Efficient Extraction of Structured Motifs Using Box-Links. [Citation Graph (0, 0)][DBLP ] SPIRE, 2004, pp:267-268 [Conf ] Pierre Peterlongo , Nadia Pisanti , Frédéric Boyer , Marie-France Sagot Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. [Citation Graph (0, 0)][DBLP ] SPIRE, 2005, pp:179-190 [Conf ] Costas S. Iliopoulos , James A. M. McHugh , Pierre Peterlongo , Nadia Pisanti , Wojciech Rytter , Marie-France Sagot A First Approach to Finding Common Motifs With Gaps. [Citation Graph (0, 0)][DBLP ] Stringology, 2004, pp:88-97 [Conf ] Pierre Peterlongo , Julien Allali , Marie-France Sagot The gapped-factor tree. [Citation Graph (0, 0)][DBLP ] Stringology, 2006, pp:182-196 [Conf ] Julien Allali , Marie-France Sagot Novel Tree Edit Operations for RNA Secondary Structure Comparison. [Citation Graph (0, 0)][DBLP ] WABI, 2004, pp:412-425 [Conf ] Vincent Lacroix , Cristina G. Fernandes , Marie-France Sagot Reaction Motifs in Metabolic Networks. [Citation Graph (0, 0)][DBLP ] WABI, 2005, pp:178-191 [Conf ] Nadia Pisanti , Marie-France Sagot Further Thoughts on the Syntenic Distance between Genomes. [Citation Graph (0, 0)][DBLP ] Algorithmica, 2002, v:34, n:2, pp:157-180 [Journal ] Marie-France Sagot , Alain Viari , Joël Pothier , Henry Soldano Finding flexible patterns in a text: an application to three-dimensional molecular matching. [Citation Graph (0, 0)][DBLP ] Computer Applications in the Biosciences, 1995, v:11, n:1, pp:59-70 [Journal ] Eric Tannier , Anne Bergeron , Marie-France Sagot Advances on sorting by reversals. [Citation Graph (0, 0)][DBLP ] Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:881-888 [Journal ] Costas S. Iliopoulos , James A. M. McHugh , Pierre Peterlongo , Nadia Pisanti , Wojciech Rytter , Marie-France Sagot A first approach to finding common motifs with gaps. [Citation Graph (0, 0)][DBLP ] Int. J. Found. Comput. Sci., 2005, v:16, n:6, pp:1145-1154 [Journal ] Laurent Marsan , Marie-France Sagot Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification. [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 2000, v:7, n:3-4, pp:345-362 [Journal ] Stéphane Robin , Jean-Jacques Daudin , Hugues Richard , Marie-France Sagot , Sophie Schbath Occurrence Probability of Structured Motifs in Random Sequences. [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 2002, v:9, n:6, pp:761-774 [Journal ] Marie-France Sagot , Eugene W. Myers Identifying Satellites and Periodic Repetitions in Biological Sequences. [Citation Graph (0, 0)][DBLP ] Journal of Computational Biology, 1998, v:5, n:3, pp:539-554 [Journal ] Julien Allali , Marie-France Sagot A New Distance for High Level RNA Secondary Structure Comparison. [Citation Graph (0, 0)][DBLP ] IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:1, pp:3-14 [Journal ] Alexandra M. Carvalho , Ana T. Freitas , Arlindo L. Oliveira , Marie-France Sagot An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. [Citation Graph (0, 0)][DBLP ] IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:2, pp:126-140 [Journal ] Nadia Pisanti , Maxime Crochemore , Roberto Grossi , Marie-France Sagot Bases of Motifs for Generating Repeated Patterns with Wild Cards. [Citation Graph (0, 0)][DBLP ] IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:1, pp:40-50 [Journal ] Vincent Lacroix , Cristina G. Fernandes , Marie-France Sagot Motif Search in Graphs: Application to Metabolic Networks. [Citation Graph (0, 0)][DBLP ] IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:360-368 [Journal ] Philippe Blayo , Pierre Rouzé , Marie-France Sagot Orphan gene finding - an exon assembly approach. [Citation Graph (0, 0)][DBLP ] Theor. Comput. Sci., 2003, v:290, n:3, pp:1407-1431 [Journal ] Maxime Crochemore , Costas S. Iliopoulos , Manal Mohamed , Marie-France Sagot Longest repeats with a block of k don't cares. [Citation Graph (0, 0)][DBLP ] Theor. Comput. Sci., 2006, v:362, n:1-3, pp:248-254 [Journal ] Marie-France Sagot , Alain Viari , Henry Soldano Multiple Sequence Comparison - A Peptide Matching Approach. [Citation Graph (0, 0)][DBLP ] Theor. Comput. Sci., 1997, v:180, n:1-2, pp:115-137 [Journal ] Estela Maris Rodrigues , Marie-France Sagot , Yoshiko Wakabayashi The maximum agreement forest problem: Approximation algorithms and computational experiments. [Citation Graph (0, 0)][DBLP ] Theor. Comput. Sci., 2007, v:374, n:1-3, pp:91-110 [Journal ] Marília D. V. Braga , Marie-France Sagot , Celine Scornavacca , Eric Tannier The Solution Space of Sorting by Reversals. [Citation Graph (0, 0)][DBLP ] ISBRA, 2007, pp:293-304 [Conf ] Emilios Cambouropoulos , Maxime Crochemore , Costas S. Iliopoulos , Manal Mohamed , Marie-France Sagot All maximal-pairs in step-leap representation of melodic sequence. [Citation Graph (0, 0)][DBLP ] Inf. Sci., 2007, v:177, n:9, pp:1954-1962 [Journal ] Yoan Diekmann , Marie-France Sagot , Eric Tannier Evolution under Reversals: Parsimony and Conservation of Common Intervals. [Citation Graph (0, 0)][DBLP ] IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:2, pp:301-309 [Journal ] Efficient Learning of Bayesian Network Classifiers. [Citation Graph (, )][DBLP ] Multiple Alignment of Biological Networks: A Flexible Approach. [Citation Graph (, )][DBLP ] Mod/Resc Parsimony Inference. [Citation Graph (, )][DBLP ] Efficient representation and P -value computation for high-order Markov motifs. [Citation Graph (, )][DBLP ] Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. [Citation Graph (, )][DBLP ] Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. [Citation Graph (, )][DBLP ] ISMB/ECCB 2009 Stockholm. [Citation Graph (, )][DBLP ] Cassis: detection of genomic rearrangement breakpoints. [Citation Graph (, )][DBLP ] Precise detection of rearrangement breakpoints in mammalian chromosomes. [Citation Graph (, )][DBLP ] A new distance for high level RNA secondary structure comparison [Citation Graph (, )][DBLP ] Mod/Resc Parsimony Inference [Citation Graph (, )][DBLP ] Repetition-free longest common subsequence. [Citation Graph (, )][DBLP ] Search in 0.025secs, Finished in 0.030secs