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Marie-France Sagot: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
    A highly scalable algorithm for the extraction of CIS-regulatory regions. [Citation Graph (0, 0)][DBLP]
    APBC, 2005, pp:273-282 [Conf]
  2. Marie-France Sagot, Eric Tannier
    Perfect Sorting by Reversals. [Citation Graph (0, 0)][DBLP]
    COCOON, 2005, pp:42-51 [Conf]
  3. Marie-France Sagot, Alain Viari
    A Double Combinatorial Approach to Discovering Patterns in Biological Sequences. [Citation Graph (0, 0)][DBLP]
    CPM, 1996, pp:186-208 [Conf]
  4. Marie-France Sagot, Alain Viari
    Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices. [Citation Graph (0, 0)][DBLP]
    CPM, 1997, pp:224-246 [Conf]
  5. Marie-France Sagot, Alain Viari, Henry Soldano
    Multiple Sequence Comparison: A Peptide Matching Approach. [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:366-385 [Conf]
  6. Eric Tannier, Marie-France Sagot
    Sorting by Reversals in Subquadratic Time. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:1-13 [Conf]
  7. Marie-France Sagot, Alain Viari, Henry Soldano
    A Distance-Based Block Searching Algorithm. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:322-331 [Conf]
  8. Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot
    A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories. [Citation Graph (0, 0)][DBLP]
    ISMIR, 2005, pp:167-174 [Conf]
  9. Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot
    Longest Repeats with a Block of Don't Cares. [Citation Graph (0, 0)][DBLP]
    LATIN, 2004, pp:271-278 [Conf]
  10. Nadia Pisanti, Alexandra M. Carvalho, Laurent Marsan, Marie-France Sagot
    RISOTTO: Fast Extraction of Motifs with Mismatches. [Citation Graph (0, 0)][DBLP]
    LATIN, 2006, pp:757-768 [Conf]
  11. Marie-France Sagot
    Spelling Approximate Repeated or Common Motifs Using a Suffix Tree. [Citation Graph (0, 0)][DBLP]
    LATIN, 1998, pp:374-390 [Conf]
  12. Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot
    A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum. [Citation Graph (0, 0)][DBLP]
    MFCS, 2003, pp:622-631 [Conf]
  13. Estela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi
    Some Approximation Results for the Maximum Agreement Forest Problem. [Citation Graph (0, 0)][DBLP]
    RANDOM-APPROX, 2001, pp:159-169 [Conf]
  14. Laurent Marsan, Marie-France Sagot
    Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:210-219 [Conf]
  15. Marie-France Sagot, Eugene W. Myers
    Identifying satellites in nucleic acid sequences. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:234-242 [Conf]
  16. Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot
    A parallel algorithm for the extraction of structured motifs. [Citation Graph (0, 0)][DBLP]
    SAC, 2004, pp:147-153 [Conf]
  17. Julien Allali, Marie-France Sagot
    A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2005, pp:348-359 [Conf]
  18. Maxime Crochemore, Raffaele Giancarlo, Marie-France Sagot
    Longest Motifs with a Functionally Equivalent Central Block. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2004, pp:298-209 [Conf]
  19. Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
    Efficient Extraction of Structured Motifs Using Box-Links. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2004, pp:267-268 [Conf]
  20. Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Marie-France Sagot
    Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2005, pp:179-190 [Conf]
  21. Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot
    A First Approach to Finding Common Motifs With Gaps. [Citation Graph (0, 0)][DBLP]
    Stringology, 2004, pp:88-97 [Conf]
  22. Pierre Peterlongo, Julien Allali, Marie-France Sagot
    The gapped-factor tree. [Citation Graph (0, 0)][DBLP]
    Stringology, 2006, pp:182-196 [Conf]
  23. Julien Allali, Marie-France Sagot
    Novel Tree Edit Operations for RNA Secondary Structure Comparison. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:412-425 [Conf]
  24. Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot
    Reaction Motifs in Metabolic Networks. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:178-191 [Conf]
  25. Nadia Pisanti, Marie-France Sagot
    Further Thoughts on the Syntenic Distance between Genomes. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 2002, v:34, n:2, pp:157-180 [Journal]
  26. Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano
    Finding flexible patterns in a text: an application to three-dimensional molecular matching. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:1, pp:59-70 [Journal]
  27. Eric Tannier, Anne Bergeron, Marie-France Sagot
    Advances on sorting by reversals. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:881-888 [Journal]
  28. Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot
    A first approach to finding common motifs with gaps. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 2005, v:16, n:6, pp:1145-1154 [Journal]
  29. Laurent Marsan, Marie-France Sagot
    Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:345-362 [Journal]
  30. Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath
    Occurrence Probability of Structured Motifs in Random Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:6, pp:761-774 [Journal]
  31. Marie-France Sagot, Eugene W. Myers
    Identifying Satellites and Periodic Repetitions in Biological Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:539-554 [Journal]
  32. Julien Allali, Marie-France Sagot
    A New Distance for High Level RNA Secondary Structure Comparison. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:1, pp:3-14 [Journal]
  33. Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
    An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:2, pp:126-140 [Journal]
  34. Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot
    Bases of Motifs for Generating Repeated Patterns with Wild Cards. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:1, pp:40-50 [Journal]
  35. Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot
    Motif Search in Graphs: Application to Metabolic Networks. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:360-368 [Journal]
  36. Philippe Blayo, Pierre Rouzé, Marie-France Sagot
    Orphan gene finding - an exon assembly approach. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:290, n:3, pp:1407-1431 [Journal]
  37. Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot
    Longest repeats with a block of k don't cares. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2006, v:362, n:1-3, pp:248-254 [Journal]
  38. Marie-France Sagot, Alain Viari, Henry Soldano
    Multiple Sequence Comparison - A Peptide Matching Approach. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1997, v:180, n:1-2, pp:115-137 [Journal]
  39. Estela Maris Rodrigues, Marie-France Sagot, Yoshiko Wakabayashi
    The maximum agreement forest problem: Approximation algorithms and computational experiments. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2007, v:374, n:1-3, pp:91-110 [Journal]
  40. Marília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier
    The Solution Space of Sorting by Reversals. [Citation Graph (0, 0)][DBLP]
    ISBRA, 2007, pp:293-304 [Conf]
  41. Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot
    All maximal-pairs in step-leap representation of melodic sequence. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 2007, v:177, n:9, pp:1954-1962 [Journal]
  42. Yoan Diekmann, Marie-France Sagot, Eric Tannier
    Evolution under Reversals: Parsimony and Conservation of Common Intervals. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:2, pp:301-309 [Journal]

  43. Efficient Learning of Bayesian Network Classifiers. [Citation Graph (, )][DBLP]


  44. Multiple Alignment of Biological Networks: A Flexible Approach. [Citation Graph (, )][DBLP]


  45. Mod/Resc Parsimony Inference. [Citation Graph (, )][DBLP]


  46. Efficient representation and P-value computation for high-order Markov motifs. [Citation Graph (, )][DBLP]


  47. Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. [Citation Graph (, )][DBLP]


  48. Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. [Citation Graph (, )][DBLP]


  49. ISMB/ECCB 2009 Stockholm. [Citation Graph (, )][DBLP]


  50. Cassis: detection of genomic rearrangement breakpoints. [Citation Graph (, )][DBLP]


  51. Precise detection of rearrangement breakpoints in mammalian chromosomes. [Citation Graph (, )][DBLP]


  52. A new distance for high level RNA secondary structure comparison [Citation Graph (, )][DBLP]


  53. Mod/Resc Parsimony Inference [Citation Graph (, )][DBLP]


  54. Repetition-free longest common subsequence. [Citation Graph (, )][DBLP]


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