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Pavel A. Pevzner: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
    Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. [Citation Graph (0, 0)][DBLP]
    APBC, 2006, pp:109-119 [Conf]
  2. Pavel A. Pevzner
    Protein Identification via Spectral Networks Analysis. [Citation Graph (0, 0)][DBLP]
    APBC, 2007, pp:5- [Conf]
  3. Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner
    Approximation Algorithms for Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:43-53 [Conf]
  4. Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner
    Spliced Alignment: A New Approach to Gene Recognition. [Citation Graph (0, 0)][DBLP]
    CPM, 1996, pp:141-158 [Conf]
  5. Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller
    Parametric Recomuting in Alignment Graphs. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:87-101 [Conf]
  6. Pavel A. Pevzner
    Multiple Alignment with Guaranteed Error Bounds and Communication Cost. [Citation Graph (0, 0)][DBLP]
    CPM, 1992, pp:205-213 [Conf]
  7. Pavel A. Pevzner, Michael S. Waterman
    Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. [Citation Graph (0, 0)][DBLP]
    CPM, 1992, pp:79-89 [Conf]
  8. Pavel A. Pevzner, Michael S. Waterman
    A Fast Filtration Algorithm for the Substring Matching Problem. [Citation Graph (0, 0)][DBLP]
    CPM, 1993, pp:197-214 [Conf]
  9. Martin Vingron, Pavel A. Pevzner
    Multiple Sequence Comparison and n-Dimensional Image Reconstruction. [Citation Graph (0, 0)][DBLP]
    CPM, 1993, pp:243-253 [Conf]
  10. Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner
    Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:157-166 [Conf]
  11. Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner
    Finding subtle motifs by branching from sample strings. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:149-155 [Conf]
  12. Benjamin J. Raphael, Stanislav Volik, Colin Collins, Pavel A. Pevzner
    Reconstructing tumor genome architectures. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:162-171 [Conf]
  13. Vineet Bafna, Pavel A. Pevzner
    Genome Rearrangements and Sorting by Reversals [Citation Graph (0, 0)][DBLP]
    FOCS, 1993, pp:148-157 [Conf]
  14. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). [Citation Graph (0, 0)][DBLP]
    FOCS, 1995, pp:581-592 [Conf]
  15. Max A. Alekseyev, Pavel A. Pevzner
    Genome Halving Problem Revisited. [Citation Graph (0, 0)][DBLP]
    FSTTCS, 2004, pp:1-15 [Conf]
  16. Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim
    Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:17- [Conf]
  17. Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner
    Splicing graphs and EST assembly problem. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:181-188 [Conf]
  18. Eleazar Eskin, Pavel A. Pevzner
    Finding composite regulatory patterns in DNA sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:354-363 [Conf]
  19. Earl Hubbell, Pavel A. Pevzner
    Fidelity Probes for DNA Arrays. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:113-117 [Conf]
  20. Neil C. Jones, Pavel A. Pevzner
    Comparative genomics reveals unusually long motifs in mammalian genomes. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:236-242 [Conf]
  21. Pavel A. Pevzner, Sing-Hoi Sze
    Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:269-278 [Conf]
  22. Pavel A. Pevzner, Haixu Tang
    Fragment assembly with double-barreled data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:225-233 [Conf]
  23. Alkes L. Price, Neil C. Jones, Pavel A. Pevzner
    De novo identification of repeat families in large genomes. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:351-358 [Conf]
  24. Benjamin J. Raphael, Pavel A. Pevzner
    Reconstructing tumor amplisomes. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:265-273 [Conf]
  25. Pavel A. Pevzner, Michael S. Waterman
    Open Combinatorial Problems in Computational Molecular Biology. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1995, pp:158-173 [Conf]
  26. Pavel A. Pevzner, Robert J. Lipshutz
    Towards DNA Sequencing Chips. [Citation Graph (0, 0)][DBLP]
    MFCS, 1994, pp:143-158 [Conf]
  27. Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner
    Genome-Wide Analysis of Bacterial Promoter Regions. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:29-40 [Conf]
  28. Zufar Mulyukov, Pavel A. Pevzner
    EULER-PCR: Finishing Experiments for Repeat Resolution. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:199-210 [Conf]
  29. Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner
    Finding Weak Motifs in DNA Sequences. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:235-246 [Conf]
  30. Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
    A new approach to sequence comparison: normalized sequence alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:2-11 [Conf]
  31. Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner
    A New Approach to Protein Identification. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:363-378 [Conf]
  32. Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
    Engineering a scalable placement heuristic for DNA probe arrays. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:148-156 [Conf]
  33. Ari Frank, Stephen Tanner, Pavel A. Pevzner
    Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:326-341 [Conf]
  34. Uri Keich, Pavel A. Pevzner
    Finding motifs in the twilight zone. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:195-204 [Conf]
  35. Pavel A. Pevzner, Vlado Dancík, Chris L. Tang
    Mutation-tolerant protein identification by mass-spectrometry. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:231-236 [Conf]
  36. Pavel A. Pevzner, Glenn Tesler
    Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:247-256 [Conf]
  37. Pavel A. Pevzner, Haixu Tang, Glenn Tesler
    De novo repeat classification and fragment assembly. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:213-222 [Conf]
  38. Pavel A. Pevzner, Haixu Tang, Michael S. Waterman
    A new approach to fragment assembly in DNA sequencing. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:256-267 [Conf]
  39. Sing-Hoi Sze, Pavel A. Pevzner
    Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:300-309 [Conf]
  40. Vineet Bafna, Pavel A. Pevzner
    Sorting Permutations by Transpositions. [Citation Graph (0, 0)][DBLP]
    SODA, 1995, pp:614-623 [Conf]
  41. Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk
    The Complexity of Gene Placement. [Citation Graph (0, 0)][DBLP]
    SODA, 1999, pp:386-395 [Conf]
  42. Sridhar Hannenhalli, Pavel A. Pevzner
    To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). [Citation Graph (0, 0)][DBLP]
    SODA, 1996, pp:304-313 [Conf]
  43. Andrey A. Mironov, Pavel A. Pevzner
    SST versus EST in Gene Recognition (Invited Paper). [Citation Graph (0, 0)][DBLP]
    SPIRE, 1998, pp:60-64 [Conf]
  44. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. [Citation Graph (0, 0)][DBLP]
    STOC, 1995, pp:178-189 [Conf]
  45. Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
    Border Length Minimization in DNA Array Design. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:435-448 [Conf]
  46. Pavel A. Pevzner
    DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1995, v:13, n:1/2, pp:77-105 [Journal]
  47. Pavel A. Pevzner, Michael S. Waterman
    Multiple Filtration and Approximate Pattern Matching. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1995, v:13, n:1/2, pp:135-154 [Journal]
  48. Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
    A new approach to sequence comparison: normalized sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:4, pp:327-337 [Journal]
  49. I. Belyi, Pavel A. Pevzner
    Software for DNA sequencing by hybridization. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:2, pp:205-210 [Journal]
  50. Mark Chaisson, Pavel A. Pevzner, Haixu Tang
    Fragment assembly with short reads. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:13, pp:2067-2074 [Journal]
  51. Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner
    Extendable words in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:2, pp:129-135 [Journal]
  52. Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner
    Positional sequencing by hybridization. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:1, pp:19-24 [Journal]
  53. Uri Keich, Pavel A. Pevzner
    Finding motifs in the twilight zone. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:10, pp:1374-1381 [Journal]
  54. Uri Keich, Pavel A. Pevzner
    U Subtle motifs: defining the limits of motif finding algorithms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:10, pp:1382-1390 [Journal]
  55. C. G. Kozhukhin, Pavel A. Pevzner
    Genome inhomogeneity is determined mainly by WW and SS dinucleotides. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1991, v:7, n:1, pp:39-49 [Journal]
  56. Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner
    DNASUN: a package of computer programs for the biotechnology laboratory. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:3, pp:331-335 [Journal]
  57. Pavel A. Pevzner
    Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:14, pp:2159-2161 [Journal]
  58. Pavel A. Pevzner
    Statistical distance between texts and filtration methods in sequence comparison. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:2, pp:121-127 [Journal]
  59. Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
    Algorithms and software for support of gene identification experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:1, pp:14-19 [Journal]
  60. Pavel A. Pevzner
    Nucleotide Sequences Versus Markov Models. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1992, v:16, n:2, pp:103-106 [Journal]
  61. Pavel A. Pevzner
    Rearrangements of DNA Sequences and SBH. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1994, v:18, n:3, pp:221-223 [Journal]
  62. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:1-2 [Journal]
  63. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1998, v:88, n:1-3, pp:3-6 [Journal]
  64. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Preface. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:673-674 [Journal]
  65. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1999, v:46, n:1, pp:1-27 [Journal]
  66. Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk
    The Complexity of Gene Placement. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 2001, v:41, n:2, pp:225-243 [Journal]
  67. Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
    Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:6, pp:1329-1352 [Journal]
  68. Vlado Dancík, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner
    De Novo Peptide Sequencing via Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:- [Journal]
  69. Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
    Scalable Heuristics for Design of DNA Probe Arrays. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:429-447 [Journal]
  70. Pavel A. Pevzner, Vlado Dancík, Chris L. Tang
    Mutation-Tolerant Protein Identification by Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:6, pp:777-787 [Journal]
  71. Sing-Hoi Sze, Pavel A. Pevzner
    Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:297-310 [Journal]
  72. Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner
    Selected Papers from RECOMB'97 - Preface. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:215-216 [Journal]
  73. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
    Guest Editors' foreword. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2005, v:70, n:3, pp:283-0 [Journal]
  74. Ming Li, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2002, v:65, n:3, pp:441- [Journal]
  75. Vineet Bafna, Pavel A. Pevzner
    Genome Rearrangements and Sorting by Reversals. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1996, v:25, n:2, pp:272-289 [Journal]
  76. Max A. Alekseyev, Pavel A. Pevzner
    Whole Genome Duplications and Contracted Breakpoint Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2007, v:36, n:6, pp:1748-1763 [Journal]
  77. Vineet Bafna, Pavel A. Pevzner
    Sorting by Transpositions. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1998, v:11, n:2, pp:224-240 [Journal]
  78. Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner
    Approximation Algorithms for Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1997, v:182, n:1-2, pp:233-244 [Journal]
  79. Max A. Alekseyev, Pavel A. Pevzner
    Whole genome duplications, multi-break rearrangements, and genome halving problem. [Citation Graph (0, 0)][DBLP]
    SODA, 2007, pp:665-679 [Conf]
  80. Pavel A. Pevzner
    Shotgun Protein Sequencing. [Citation Graph (0, 0)][DBLP]
    WABI, 2007, pp:1- [Conf]
  81. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
    Special issue on computational molecular biology. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2007, v:73, n:7, pp:1023- [Journal]
  82. Max A. Alekseyev, Pavel A. Pevzner
    Colored de Bruijn Graphs and the Genome Halving Problem. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:1, pp:98-107 [Journal]
  83. Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang
    Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:1, pp:54-64 [Journal]

  84. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. [Citation Graph (, )][DBLP]


  85. De Novo Sequencing of Nonribosomal Peptides. [Citation Graph (, )][DBLP]


  86. Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. [Citation Graph (, )][DBLP]


  87. Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. [Citation Graph (, )][DBLP]


  88. Representing and comparing protein structures as paths in three-dimensional space. [Citation Graph (, )][DBLP]


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