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Luay Nakhleh: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Derek A. Ruths, Luay Nakhleh
    RECOMP: A Parsimony-Based Method for Detecting Recombination. [Citation Graph (0, 0)][DBLP]
    APBC, 2006, pp:59-68 [Conf]
  2. Derek A. Ruths, Luay Nakhleh
    Techniques for Assessing Phylogenetic Branch Support: A Performance Study. [Citation Graph (0, 0)][DBLP]
    APBC, 2006, pp:187-196 [Conf]
  3. Luay Nakhleh, Daniel P. Miranker, Francois Barbancon, William H. Piel, Michael J. Donoghue
    Requirements of Phylogenetic Databases. [Citation Graph (0, 0)][DBLP]
    BIBE, 2003, pp:141-148 [Conf]
  4. Iyad A. Kanj, Luay Nakhleh, Ge Xia
    Reconstructing Evolution of Natural Languages: Complexity and Parameterized Algorithms. [Citation Graph (0, 0)][DBLP]
    COCOON, 2006, pp:299-308 [Conf]
  5. Luay Nakhleh, Derek A. Ruths, Li-San Wang
    RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer. [Citation Graph (0, 0)][DBLP]
    COCOON, 2005, pp:84-93 [Conf]
  6. Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Mellor-Crummey
    Reconstructing Phylogenetic Networks Using Maximum Parsimony. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:93-102 [Conf]
  7. Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh
    Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. [Citation Graph (0, 0)][DBLP]
    HPCC, 2005, pp:776-785 [Conf]
  8. Luay Nakhleh, Li-San Wang
    Phylogenetic Networks, Trees, and Clusters. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2005, pp:919-926 [Conf]
  9. Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan
    PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. [Citation Graph (0, 0)][DBLP]
    ICPADS (2), 2005, pp:346-350 [Conf]
  10. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    Designing fast converging phylogenetic methods. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:190-198 [Conf]
  11. Esra Erdem, Vladimir Lifschitz, Luay Nakhleh, Donald Ringe
    Reconstructing the Evolutionary History of Indo-European Languages Using Answer Set Programming. [Citation Graph (0, 0)][DBLP]
    PADL, 2003, pp:160-176 [Conf]
  12. Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    The Accuracy of Fast Phylogenetic Methods for Large Datasets. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:211-222 [Conf]
  13. Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse
    Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:315-326 [Conf]
  14. Luay Nakhleh, Tandy Warnow, C. Randal Linder
    Reconstructing reticulate evolution in species: theory and practice. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:337-346 [Conf]
  15. Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh
    Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:215-229 [Conf]
  16. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    The Performance of Phylogenetic Methods on Trees of Bounded Diameter. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:214-226 [Conf]
  17. Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow
    Estimating the Deviation from a Molecular Clock. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:287-299 [Conf]
  18. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
    Maximum likelihood of phylogenetic networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:21, pp:2604-2611 [Journal]
  19. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
    Efficient parsimony-based methods for phylogenetic network reconstruction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:123-128 [Journal]
  20. Luay Nakhleh, Tandy Warnow, C. Randal Linder, Katherine St. John
    Reconstructing Reticulate Evolution in SpeciesTheory and Practice. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:796-811 [Journal]
  21. Bernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme
    Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:1, pp:13-23 [Journal]
  22. Luay Nakhleh, Li-San Wang
    Phylogenetic Networks: Properties and Relationship to Trees and Clusters. [Citation Graph (0, 0)][DBLP]
    T. Comp. Sys. Biology, 2005, v:2, n:, pp:82-99 [Journal]
  23. Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
    De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis. [Citation Graph (0, 0)][DBLP]
    Systems Biology and Computational Proteomics, 2006, pp:108-118 [Conf]
  24. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
    A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance. [Citation Graph (0, 0)][DBLP]
    ISBRA, 2007, pp:61-72 [Conf]
  25. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
    Maximum likelihood of phylogenetic networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:8, pp:1046-1047 [Journal]

  26. SPR-based Tree Reconciliation: Non-binary Trees and Multiple Solutions. [Citation Graph (, )][DBLP]


  27. Seeing the Trees and Their Branches in the Forest is Hard. [Citation Graph (, )][DBLP]


  28. Efficient inference of bacterial strain trees from genome-scale multilocus data. [Citation Graph (, )][DBLP]


  29. Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer. [Citation Graph (, )][DBLP]


  30. The Compatibility of Binary Characters on Phylogenetic Networks: Complexity and Parameterized Algorithms. [Citation Graph (, )][DBLP]


  31. GS2: an efficiently computable measure of GO-based similarity of gene sets. [Citation Graph (, )][DBLP]


  32. PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships. [Citation Graph (, )][DBLP]


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